STRINGSTRING
LSM3 LSM3 Snrnp200 Snrnp200 Prpf3 Prpf3 LSM4 LSM4 Lsm6 Lsm6 Lsm7 Lsm7 I79_009902 I79_009902 Prpf4 Prpf4 Eftud2 Eftud2 LSM5 LSM5 LSM8 LSM8 I79_014011 I79_014011 I79_014984 I79_014984 Lsm2 Lsm2 Sart1 Sart1 Prpf31 Prpf31 Ddx23 Ddx23 I79_021114 I79_021114
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (103 aa)
Snrnp200U5 small nuclear ribonucleoprotein 200 kDa helicase. (1377 aa)
Prpf3U4/U6 small nuclear ribonucleoprotein Prp3. (683 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (124 aa)
Lsm6U6 snRNA-associated Sm-like protein LSm6. (80 aa)
Lsm7U6 snRNA-associated Sm-like protein LSm7. (104 aa)
I79_009902Pre-mRNA-processing factor 6. (368 aa)
Prpf4U4/U6 small nuclear ribonucleoprotein Prp4. (521 aa)
Eftud2116 kDa U5 small nuclear ribonucleoprotein component. (972 aa)
LSM5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (62 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (75 aa)
I79_014011Thioredoxin-like protein 4A. (91 aa)
I79_014984Squamous cell carcinoma antigen recognized by T-cells 3. (803 aa)
Lsm2U6 snRNA-associated Sm-like protein LSm2. (94 aa)
Sart1U4/U6.U5 tri-snRNP-associated protein 1. (1215 aa)
Prpf31U4/U6 small nuclear ribonucleoprotein Prp31. (441 aa)
Ddx23Putative ATP-dependent RNA helicase DDX23. (819 aa)
I79_021114Pre-mRNA-processing factor 6. (535 aa)
Your Current Organism:
Cricetulus griseus
NCBI taxonomy Id: 10029
Other names: C. griseus, CHO cell lines, Chinese hamster, Chinese hamsters, Cricetulus aureus, Cricetulus barabensis griseus
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.