(10 nodes) Mixed, incl. Protein FAM222, and Somatomedin B domain, chordata network (Cricetulus griseus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	I79_001130	Olfactory receptor. (286 aa)
	I79_002245	Proteoglycan 4. (973 aa)
	Vwa3b	Von Willebrand factor A domain-containing protein 3B. (295 aa)
	I79_010027	Uncharacterized protein C17orf63. (171 aa)
	I79_010143	Olfactory receptor. (311 aa)
	I79_018910	Olfactory receptor. (213 aa)
	H671_2g6817	Olfactory receptor. (314 aa)
	Pdzd9	PDZ domain-containing protein C16orf65-like. (242 aa)
	Fam222b	Uncharacterized protein C17orf63-like. (540 aa)
	I79_024163	Olfactory receptor 51D1. (231 aa)

Your Current Organism:

Cricetulus griseus

NCBI taxonomy Id: 10029
Other names: C. griseus, CHO cell lines, Chinese hamster, Chinese hamsters, Cricetulus aureus, Cricetulus barabensis griseus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Fam222b	I79_024163	G3IGI4	G3IJX2	Uncharacterized protein C17orf63-like.	Olfactory receptor 51D1.	0.463
Fam222b	Pdzd9	G3IGI4	G3IGA1	Uncharacterized protein C17orf63-like.	PDZ domain-containing protein C16orf65-like.	0.403
I79_001130	Pdzd9	G3GTY7	G3IGA1	Olfactory receptor.	PDZ domain-containing protein C16orf65-like.	0.418
I79_002245	I79_024163	G3GWW0	G3IJX2	Proteoglycan 4.	Olfactory receptor 51D1.	0.574
I79_010027	I79_024163	G3HHC8	G3IJX2	Uncharacterized protein C17orf63.	Olfactory receptor 51D1.	0.463
I79_010027	Pdzd9	G3HHC8	G3IGA1	Uncharacterized protein C17orf63.	PDZ domain-containing protein C16orf65-like.	0.403
I79_018910	Pdzd9	G3I5Z9	G3IGA1	Olfactory receptor.	PDZ domain-containing protein C16orf65-like.	0.418
I79_024163	Fam222b	G3IJX2	G3IGI4	Olfactory receptor 51D1.	Uncharacterized protein C17orf63-like.	0.463
I79_024163	I79_002245	G3IJX2	G3GWW0	Olfactory receptor 51D1.	Proteoglycan 4.	0.574
I79_024163	I79_010027	G3IJX2	G3HHC8	Olfactory receptor 51D1.	Uncharacterized protein C17orf63.	0.463
I79_024163	Pdzd9	G3IJX2	G3IGA1	Olfactory receptor 51D1.	PDZ domain-containing protein C16orf65-like.	0.573
Pdzd9	Fam222b	G3IGA1	G3IGI4	PDZ domain-containing protein C16orf65-like.	Uncharacterized protein C17orf63-like.	0.403
Pdzd9	I79_001130	G3IGA1	G3GTY7	PDZ domain-containing protein C16orf65-like.	Olfactory receptor.	0.418
Pdzd9	I79_010027	G3IGA1	G3HHC8	PDZ domain-containing protein C16orf65-like.	Uncharacterized protein C17orf63.	0.403
Pdzd9	I79_018910	G3IGA1	G3I5Z9	PDZ domain-containing protein C16orf65-like.	Olfactory receptor.	0.418
Pdzd9	I79_024163	G3IGA1	G3IJX2	PDZ domain-containing protein C16orf65-like.	Olfactory receptor 51D1.	0.573
Pdzd9	Vwa3b	G3IGA1	G3H1Q3	PDZ domain-containing protein C16orf65-like.	Von Willebrand factor A domain-containing protein 3B.	0.570
Vwa3b	Pdzd9	G3H1Q3	G3IGA1	Von Willebrand factor A domain-containing protein 3B.	PDZ domain-containing protein C16orf65-like.	0.570