(5 nodes) Mixed, incl. F-box only protein 28, and Parallel beta-helix repeat-2 network (Cricetulus griseus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Fbxo28	F-box only protein 28. (275 aa)
	Fbxo11	F-box only protein 11. (843 aa)
	Fbxo4	F-box only protein 4. (248 aa)
	Fbxo2	F-box only protein 2. (332 aa)
	Fbxo9	F-box only protein 9. (366 aa)

Your Current Organism:

Cricetulus griseus

NCBI taxonomy Id: 10029
Other names: C. griseus, CHO cell lines, Chinese hamster, Chinese hamsters, Cricetulus aureus, Cricetulus barabensis griseus

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Fbxo11	Fbxo2	G3H5Q6	G3HUL8	F-box only protein 11.	F-box only protein 2.	0.420
Fbxo11	Fbxo28	G3H5Q6	G3GRA9	F-box only protein 11.	F-box only protein 28.	0.876
Fbxo11	Fbxo4	G3H5Q6	G3HHE8	F-box only protein 11.	F-box only protein 4.	0.875
Fbxo11	Fbxo9	G3H5Q6	G3I5G9	F-box only protein 11.	F-box only protein 9.	0.904
Fbxo2	Fbxo11	G3HUL8	G3H5Q6	F-box only protein 2.	F-box only protein 11.	0.420
Fbxo2	Fbxo4	G3HUL8	G3HHE8	F-box only protein 2.	F-box only protein 4.	0.940
Fbxo28	Fbxo11	G3GRA9	G3H5Q6	F-box only protein 28.	F-box only protein 11.	0.876
Fbxo28	Fbxo4	G3GRA9	G3HHE8	F-box only protein 28.	F-box only protein 4.	0.875
Fbxo28	Fbxo9	G3GRA9	G3I5G9	F-box only protein 28.	F-box only protein 9.	0.874
Fbxo4	Fbxo11	G3HHE8	G3H5Q6	F-box only protein 4.	F-box only protein 11.	0.875
Fbxo4	Fbxo2	G3HHE8	G3HUL8	F-box only protein 4.	F-box only protein 2.	0.940
Fbxo4	Fbxo28	G3HHE8	G3GRA9	F-box only protein 4.	F-box only protein 28.	0.875
Fbxo4	Fbxo9	G3HHE8	G3I5G9	F-box only protein 4.	F-box only protein 9.	0.886
Fbxo9	Fbxo11	G3I5G9	G3H5Q6	F-box only protein 9.	F-box only protein 11.	0.904
Fbxo9	Fbxo28	G3I5G9	G3GRA9	F-box only protein 9.	F-box only protein 28.	0.874
Fbxo9	Fbxo4	G3I5G9	G3HHE8	F-box only protein 9.	F-box only protein 4.	0.886