5 items (Cricetulus griseus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Polr3d	DNA-directed RNA polymerase III subunit RPC4. (398 aa)
	Polr3c	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (533 aa)
	Crcp	DNA-directed RNA polymerase III subunit RPC9-like protein. (215 aa)
	Polr3e	DNA-directed RNA polymerase III subunit RPC5. (611 aa)
	I79_023511	DNA-directed RNA polymerase III subunit RPC8. (175 aa)

Your Current Organism:

Cricetulus griseus

NCBI taxonomy Id: 10029
Other names: C. griseus, CHO cell lines, Chinese hamster, Chinese hamsters, Cricetulus aureus, Cricetulus barabensis griseus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Crcp	I79_023511	G3IDU5	G3II49	DNA-directed RNA polymerase III subunit RPC9-like protein.	DNA-directed RNA polymerase III subunit RPC8.	0.999
Crcp	Polr3c	G3IDU5	G3H2R8	DNA-directed RNA polymerase III subunit RPC9-like protein.	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.998
Crcp	Polr3d	G3IDU5	G3GUY1	DNA-directed RNA polymerase III subunit RPC9-like protein.	DNA-directed RNA polymerase III subunit RPC4.	0.998
Crcp	Polr3e	G3IDU5	G3IHK1	DNA-directed RNA polymerase III subunit RPC9-like protein.	DNA-directed RNA polymerase III subunit RPC5.	0.997
I79_023511	Crcp	G3II49	G3IDU5	DNA-directed RNA polymerase III subunit RPC8.	DNA-directed RNA polymerase III subunit RPC9-like protein.	0.999
I79_023511	Polr3c	G3II49	G3H2R8	DNA-directed RNA polymerase III subunit RPC8.	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.998
I79_023511	Polr3d	G3II49	G3GUY1	DNA-directed RNA polymerase III subunit RPC8.	DNA-directed RNA polymerase III subunit RPC4.	0.998
I79_023511	Polr3e	G3II49	G3IHK1	DNA-directed RNA polymerase III subunit RPC8.	DNA-directed RNA polymerase III subunit RPC5.	0.997
Polr3c	Crcp	G3H2R8	G3IDU5	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase III subunit RPC9-like protein.	0.998
Polr3c	I79_023511	G3H2R8	G3II49	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase III subunit RPC8.	0.998
Polr3c	Polr3d	G3H2R8	G3GUY1	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase III subunit RPC4.	0.998
Polr3c	Polr3e	G3H2R8	G3IHK1	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase III subunit RPC5.	0.998
Polr3d	Crcp	G3GUY1	G3IDU5	DNA-directed RNA polymerase III subunit RPC4.	DNA-directed RNA polymerase III subunit RPC9-like protein.	0.998
Polr3d	I79_023511	G3GUY1	G3II49	DNA-directed RNA polymerase III subunit RPC4.	DNA-directed RNA polymerase III subunit RPC8.	0.998
Polr3d	Polr3c	G3GUY1	G3H2R8	DNA-directed RNA polymerase III subunit RPC4.	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.998
Polr3d	Polr3e	G3GUY1	G3IHK1	DNA-directed RNA polymerase III subunit RPC4.	DNA-directed RNA polymerase III subunit RPC5.	0.999
Polr3e	Crcp	G3IHK1	G3IDU5	DNA-directed RNA polymerase III subunit RPC5.	DNA-directed RNA polymerase III subunit RPC9-like protein.	0.997
Polr3e	I79_023511	G3IHK1	G3II49	DNA-directed RNA polymerase III subunit RPC5.	DNA-directed RNA polymerase III subunit RPC8.	0.997
Polr3e	Polr3c	G3IHK1	G3H2R8	DNA-directed RNA polymerase III subunit RPC5.	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.998
Polr3e	Polr3d	G3IHK1	G3GUY1	DNA-directed RNA polymerase III subunit RPC5.	DNA-directed RNA polymerase III subunit RPC4.	0.999