(44 nodes) Phagophore assembly site network (Cricetulus griseus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Atg2b	Autophagy-related protein 2-like B. (2076 aa)
	Rab7a	Ras-related protein Rab-7a. (207 aa)
	Becn1	Beclin-1. (448 aa)
	Wdr45	WD repeat domain phosphoinositide-interacting protein 4. (360 aa)
	I79_012286	Zinc finger FYVE domain-containing protein 1. (211 aa)
	Zfyve1	Zinc finger FYVE domain-containing protein 1. (513 aa)
	Atg5	Autophagy protein 5; Involved in autophagic vesicle formation. (147 aa)
	Atg9a	Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family. (839 aa)
	Pik3c3	Phosphatidylinositol 3-kinase catalytic subunit type 3. (822 aa)
	I79_016240	Beclin-1. (119 aa)
	C3H16orf70	UPF0183 protein C16orf70-like. (620 aa)
	Atg16l2	Autophagy-related protein 16-2. (332 aa)
	I79_016561	Autophagy-related protein 16-2. (169 aa)
	Rab1b	Ras-related protein Rab-1B. (201 aa)
	I79_018303	WD repeat domain phosphoinositide-interacting protein 2. (96 aa)
	I79_019091	Autophagy-related protein 2-like A. (455 aa)
	I79_024541	Starch-binding domain-containing protein 1. (178 aa)
	Atg2a	Autophagy-related protein 2-like A. (945 aa)
	Rb1cc1	RB1-inducible coiled-coil protein 1. (1464 aa)
	Atg16l1	Autophagy-related protein 16-1. (545 aa)
	H671_1g2680	Sorting nexin-7. (381 aa)
	Ulk3	Serine/threonine-protein kinase ULK3; Belongs to the protein kinase superfamily. (216 aa)
	Atg101	Autophagy-related protein 101. (218 aa)
	Wdr45b	WD repeat domain phosphoinositide-interacting protein 3. (316 aa)
	Ulk2	Serine/threonine-protein kinase ULK2. (830 aa)
	I79_001738	Serine/threonine-protein kinase ULK2. (112 aa)
	Snx30	Sorting nexin-30. (405 aa)
	Ilrun	Uncharacterized protein C6orf106. (217 aa)
	Sqstm1	Sequestosome-1. (358 aa)
	I79_014064	Protein TRS85-like. (932 aa)
	I79_014258	Cysteine dioxygenase. (99 aa)
	I79_014915	Serine/threonine-protein kinase ULK3. (105 aa)
	Wipi2	WD repeat domain phosphoinositide-interacting protein 2. (445 aa)
	I79_002869	Autophagy-related protein 13; Belongs to the ATG13 family. Metazoan subfamily. (479 aa)
	I79_003382	Beclin-1-like protein 1. (96 aa)
	Stx12	Syntaxin-12; Belongs to the syntaxin family. (274 aa)
	Atg14	Uncharacterized protein KIAA0831. (375 aa)
	I79_006552	WD repeat domain phosphoinositide-interacting protein 1. (444 aa)
	I79_007015	Breast carcinoma-amplified sequence 3-like. (717 aa)
	Bcas3	Breast carcinoma-amplified sequence 3. (92 aa)
	I79_007692	Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family. (618 aa)
	Ulk1	Serine/threonine-protein kinase ULK1. (999 aa)
	I79_014954	Autophagy-related protein 7. (439 aa)
	I79_009941	Beclin-1-like protein 1. (131 aa)

Your Current Organism:

Cricetulus griseus

NCBI taxonomy Id: 10029
Other names: C. griseus, CHO cell lines, Chinese hamster, Chinese hamsters, Cricetulus aureus, Cricetulus barabensis griseus

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Atg101	Atg14	G3IIU3	G3H7A9	Autophagy-related protein 101.	Uncharacterized protein KIAA0831.	0.993
Atg101	Atg16l1	G3IIU3	G3ICU3	Autophagy-related protein 101.	Autophagy-related protein 16-1.	0.662
Atg101	Atg16l2	G3IIU3	G3HZQ2	Autophagy-related protein 101.	Autophagy-related protein 16-2.	0.468
Atg101	Atg2a	G3IIU3	G3I6G2	Autophagy-related protein 101.	Autophagy-related protein 2-like A.	0.430
Atg101	Atg2b	G3IIU3	G3HHD1	Autophagy-related protein 101.	Autophagy-related protein 2-like B.	0.430
Atg101	Atg5	G3IIU3	G3HVR2	Autophagy-related protein 101.	Autophagy protein 5; Involved in autophagic vesicle formation.	0.781
Atg101	Atg9a	G3IIU3	G3HWF3	Autophagy-related protein 101.	Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family.	0.663
Atg101	Becn1	G3IIU3	G3HLZ1	Autophagy-related protein 101.	Beclin-1.	0.967
Atg101	I79_001738	G3IIU3	G3GVJ9	Autophagy-related protein 101.	Serine/threonine-protein kinase ULK2.	0.899
Atg101	I79_002869	G3IIU3	G3GYJ0	Autophagy-related protein 101.	Autophagy-related protein 13; Belongs to the ATG13 family. Metazoan subfamily.	0.997
Atg101	I79_003382	G3IIU3	G3GZT5	Autophagy-related protein 101.	Beclin-1-like protein 1.	0.689
Atg101	I79_006552	G3IIU3	G3H854	Autophagy-related protein 101.	WD repeat domain phosphoinositide-interacting protein 1.	0.514
Atg101	I79_007692	G3IIU3	G3HB71	Autophagy-related protein 101.	Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family.	0.574
Atg101	I79_009941	G3IIU3	G3HH45	Autophagy-related protein 101.	Beclin-1-like protein 1.	0.689
Atg101	I79_014258	G3IIU3	G3HTN0	Autophagy-related protein 101.	Cysteine dioxygenase.	0.715
Atg101	I79_014915	G3IIU3	G3HVC9	Autophagy-related protein 101.	Serine/threonine-protein kinase ULK3.	0.743
Atg101	I79_014954	G3IIU3	G3HVG7	Autophagy-related protein 101.	Autophagy-related protein 7.	0.685
Atg101	I79_016240	G3IIU3	G3HYU8	Autophagy-related protein 101.	Beclin-1.	0.689
Atg101	I79_016561	G3IIU3	G3HZQ3	Autophagy-related protein 101.	Autophagy-related protein 16-2.	0.468
Atg101	I79_018303	G3IIU3	G3I4C6	Autophagy-related protein 101.	WD repeat domain phosphoinositide-interacting protein 2.	0.450