(10 nodes) Regulation of germinal center formation network (Cricetulus griseus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Serpinc1	Roquin; Belongs to the serpin family. (1418 aa)
	I79_001029	Tumor necrosis factor ligand superfamily member 13B; Belongs to the tumor necrosis factor family. (277 aa)
	Tnfaip3	Tumor necrosis factor, alpha-induced protein 3. (776 aa)
	I79_002750	Tumor necrosis factor ligand superfamily member 13; Belongs to the tumor necrosis factor family. (73 aa)
	Mef2c	Myocyte-specific enhancer factor 2C. (465 aa)
	Pkn1	Serine/threonine-protein kinase N1; Belongs to the G-protein coupled receptor 2 family. (1696 aa)
	Ada	Adenosine deaminase. (363 aa)
	I79_013182	Class II histocompatibility antigen, M alpha chain; Belongs to the MHC class II family. (261 aa)
	Foxj1	Forkhead box protein J1. (421 aa)
	Tnfrsf13c	Tumor necrosis factor receptor superfamily member 13C. (162 aa)

Your Current Organism:

Cricetulus griseus

NCBI taxonomy Id: 10029
Other names: C. griseus, CHO cell lines, Chinese hamster, Chinese hamsters, Cricetulus aureus, Cricetulus barabensis griseus

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
I79_001029	I79_002750	G3GTP2	G3GY77	Tumor necrosis factor ligand superfamily member 13B; Belongs to the tumor necrosis factor family.	Tumor necrosis factor ligand superfamily member 13; Belongs to the tumor necrosis factor family.	0.614
I79_001029	Tnfrsf13c	G3GTP2	G3IBR9	Tumor necrosis factor ligand superfamily member 13B; Belongs to the tumor necrosis factor family.	Tumor necrosis factor receptor superfamily member 13C.	0.983
I79_002750	I79_001029	G3GY77	G3GTP2	Tumor necrosis factor ligand superfamily member 13; Belongs to the tumor necrosis factor family.	Tumor necrosis factor ligand superfamily member 13B; Belongs to the tumor necrosis factor family.	0.614
I79_002750	Tnfrsf13c	G3GY77	G3IBR9	Tumor necrosis factor ligand superfamily member 13; Belongs to the tumor necrosis factor family.	Tumor necrosis factor receptor superfamily member 13C.	0.719
Tnfrsf13c	I79_001029	G3IBR9	G3GTP2	Tumor necrosis factor receptor superfamily member 13C.	Tumor necrosis factor ligand superfamily member 13B; Belongs to the tumor necrosis factor family.	0.983
Tnfrsf13c	I79_002750	G3IBR9	G3GY77	Tumor necrosis factor receptor superfamily member 13C.	Tumor necrosis factor ligand superfamily member 13; Belongs to the tumor necrosis factor family.	0.719