(23 nodes) Positive regulation of glycoprotein biosynthetic process network (Cricetulus griseus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Slc2a10	Solute carrier family 2, facilitated glucose transporter member 10; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family. (423 aa)
	Ctnnb1	Catenin beta-1. (781 aa)
	I79_009371	Calcium-binding protein p22. (182 aa)
	I79_000439	Phosphoinositide phospholipase C. (949 aa)
	Pxylp1	Acid phosphatase-like protein 2; Belongs to the histidine acid phosphatase family. (480 aa)
	Chp1	Calcium-binding protein p22. (195 aa)
	I79_015159	O-acyltransferase. (578 aa)
	Slc51b	Organic solute transporter subunit beta. (128 aa)
	Ccl19	C-C motif chemokine. (117 aa)
	Ramp1	Receptor activity-modifying protein 1. (126 aa)
	Pomt2	Protein O-mannosyl-transferase 2. (646 aa)
	Il33	Interleukin-33. (217 aa)
	Igf1	Insulin-like growth factor I. (75 aa)
	I79_016311	PRKC apoptosis WT1 regulator protein. (214 aa)
	Ncstn	Nicastrin. (615 aa)
	Ccr7	C-C chemokine receptor type 7; Belongs to the G-protein coupled receptor 1 family. (378 aa)
	I79_020783	Transcription factor 7-like 2. (451 aa)
	I79_021015	Protein O-mannosyl-transferase 1. (669 aa)
	I79_022888	Calcium-binding protein p22. (54 aa)
	Tcf7l2	Transcription factor 7-like 1. (73 aa)
	Abca2	ATP-binding cassette sub-family A member 2. (457 aa)
	Insr	Insulin receptor. (114 aa)
	Il15	Interleukin; Belongs to the IL-15/IL-21 family. (155 aa)

Your Current Organism:

Cricetulus griseus

NCBI taxonomy Id: 10029
Other names: C. griseus, CHO cell lines, Chinese hamster, Chinese hamsters, Cricetulus aureus, Cricetulus barabensis griseus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Ccl19	Ccr7	G3HN20	G3I5N8	C-C motif chemokine.	C-C chemokine receptor type 7; Belongs to the G-protein coupled receptor 1 family.	0.999
Ccr7	Ccl19	G3I5N8	G3HN20	C-C chemokine receptor type 7; Belongs to the G-protein coupled receptor 1 family.	C-C motif chemokine.	0.999
Ccr7	Il15	G3I5N8	G3HJ60	C-C chemokine receptor type 7; Belongs to the G-protein coupled receptor 1 family.	Interleukin; Belongs to the IL-15/IL-21 family.	0.493
Ctnnb1	I79_020783	G3H996	G3IAZ7	Catenin beta-1.	Transcription factor 7-like 2.	0.956
Ctnnb1	Tcf7l2	G3H996	G3IIN4	Catenin beta-1.	Transcription factor 7-like 1.	0.995
I79_020783	Ctnnb1	G3IAZ7	G3H996	Transcription factor 7-like 2.	Catenin beta-1.	0.956
I79_021015	Pomt2	G3IBJ3	G3H646	Protein O-mannosyl-transferase 1.	Protein O-mannosyl-transferase 2.	0.971
Igf1	Insr	G3H672	G3HWV6	Insulin-like growth factor I.	Insulin receptor.	0.997
Il15	Ccr7	G3HJ60	G3I5N8	Interleukin; Belongs to the IL-15/IL-21 family.	C-C chemokine receptor type 7; Belongs to the G-protein coupled receptor 1 family.	0.493
Il15	Il33	G3HJ60	G3I4V3	Interleukin; Belongs to the IL-15/IL-21 family.	Interleukin-33.	0.595
Il33	Il15	G3I4V3	G3HJ60	Interleukin-33.	Interleukin; Belongs to the IL-15/IL-21 family.	0.595
Insr	Igf1	G3HWV6	G3H672	Insulin receptor.	Insulin-like growth factor I.	0.997
Pomt2	I79_021015	G3H646	G3IBJ3	Protein O-mannosyl-transferase 2.	Protein O-mannosyl-transferase 1.	0.971
Tcf7l2	Ctnnb1	G3IIN4	G3H996	Transcription factor 7-like 1.	Catenin beta-1.	0.995