86 items (Cricetulus griseus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Stim1	Stromal interaction molecule 1. (716 aa)
	I79_000054	Calpain-2 catalytic subunit; Belongs to the peptidase C2 family. (668 aa)
	Lmod3	Leiomodin-3. (620 aa)
	Adamts15	A disintegrin and metalloproteinase with thrombospondin motifs 15. (950 aa)
	Cd9	Tetraspanin. (159 aa)
	Bin3	Bridging integrator 3. (253 aa)
	Mybphl	Proteasome endopeptidase complex. (1190 aa)
	Dner	Delta and Notch-like epidermal growth factor-related receptor. (272 aa)
	I79_022515	Serine/threonine-protein phosphatase. (325 aa)
	I79_022161	Dystrophin. (655 aa)
	Six1	Homeobox protein SIX1. (284 aa)
	I79_022007	Homeobox protein SIX4. (673 aa)
	I79_010168	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase; Catalyzes the third of the four reactions of the long-chain fatty acids elongation cycle. This endoplasmic reticulum-bound enzymatic process, allows the addition of two carbons to the chain of long- and very long-chain fatty acids/VLCFAs per cycle. This enzyme catalyzes the dehydration of the 3-hydroxyacyl-CoA intermediate into trans-2,3-enoyl-CoA, within each cycle of fatty acid elongation. Thereby, it participates to the production of VLCFAs of different chain lengths that are involved in multiple biological processes as precursors [...] (129 aa)
	I79_010748	Ryanodine receptor 1. (1261 aa)
	I79_010749	Ryanodine receptor 1. (1965 aa)
	Nfatc3	Nuclear factor of activated T-cells, cytoplasmic 3. (1075 aa)
	H671_1g2968	Putative kell blood group glycoprotein like protein. (555 aa)
	Neo1	Neogenin. (1405 aa)
	H671_3g11194	Protein FAM65B-like protein. (890 aa)
	P2rx2	P2X purinoceptor; Receptor for ATP that acts as a ligand-gated ion channel. Belongs to the P2X receptor family. (504 aa)
	Mef2c	Myocyte-specific enhancer factor 2C. (465 aa)
	Gsk3b	Glycogen synthase kinase-3 beta. (328 aa)
	Avpr1a	Vasopressin V1a receptor; Receptor for arginine vasopressin. The activity of this receptor is mediated by G proteins which activate a phosphatidyl- inositol-calcium second messenger system. Belongs to the G-protein coupled receptor 1 family. Vasopressin/oxytocin receptor subfamily. (423 aa)
	I79_007063	Hepatocyte growth factor receptor. (1222 aa)
	Cav2	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family. (162 aa)
	Myof	Myoferlin. (1449 aa)
	Klhl40	Kelch repeat and BTB domain-containing protein 5. (621 aa)
	Ptgfrn	Prostaglandin F2 receptor negative regulator. (830 aa)
	Tanc1	Protein TANC1. (1858 aa)
	Gpx1	Glutathione peroxidase; Belongs to the glutathione peroxidase family. (145 aa)
	Barx2	Homeobox protein BarH-like 2. (279 aa)
	I79_022671	Delta and Notch-like epidermal growth factor-related receptor. (176 aa)
	I79_022935	Dedicator of cytokinesis protein 1; Belongs to the DOCK family. (782 aa)
	I79_023145	Myosin-9; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1948 aa)
	I79_023475	Serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform. (81 aa)
	I79_023926	Nuclear factor of activated T-cells, cytoplasmic 2. (129 aa)
	Nfatc2	Nuclear factor of activated T-cells, cytoplasmic 2. (602 aa)
	Mymk	Transmembrane protein 8C. (225 aa)
	I79_021702	Dedicator of cytokinesis protein 2. (377 aa)
	Myorg	Uncharacterized family 31 glucosidase KIAA1161; Belongs to the glycosyl hydrolase 31 family. (310 aa)
	Cntnap1	Contactin-associated protein 1. (741 aa)
	Pld3	Phospholipase D3-like protein. (488 aa)
	Rcan1	Calcipressin-1. (197 aa)
	I79_012794	Nephrin. (1049 aa)
	I79_014206	Dedicator of cytokinesis protein 2. (785 aa)
	I79_015185	SH3 and cysteine-rich domain-containing protein 3. (325 aa)
	I79_015186	R3H domain-containing protein 2. (990 aa)
	Cd81	Tetraspanin. (236 aa)
	Xk	XK-related protein. (558 aa)
	Itgb1	Integrin beta; Belongs to the integrin beta chain family. (798 aa)
	Homer1	Homer protein-like 1. (366 aa)
	Dmd	Dystrophin. (617 aa)
	I79_017350	Myoblast determination protein 1. (112 aa)
	Ski	Ski oncogene. (636 aa)
	I79_017694	Serine/threonine-protein phosphatase 2B catalytic subunit beta isoform. (178 aa)
	Adamts5	A disintegrin and metalloproteinase with thrombospondin motifs 5. (936 aa)
	I79_018801	Dedicator of cytokinesis protein 1; Belongs to the DOCK family. (635 aa)
	Selenon	Selenoprotein N. (343 aa)
	Wnt1	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (370 aa)
	Wnt10b	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (389 aa)
	I79_025262	Delta and Notch-like epidermal growth factor-related receptor. (111 aa)
	Cacna1s	Voltage-dependent L-type calcium channel subunit alpha-1S. (514 aa)
	I79_025500	Voltage-dependent L-type calcium channel subunit alpha-1S. (87 aa)
	Myc	Myc proto-oncogene protein. (281 aa)
	I79_006368	SET and MYND domain-containing protein 3. (87 aa)
	Smyd3	SET and MYND domain-containing protein 3. (239 aa)
	I79_006225	Sonic hedgehog protein. (226 aa)
	Tmem182	Transmembrane protein 182. (201 aa)
	Igf1	Insulin-like growth factor I. (75 aa)
	Klf5	Krueppel-like factor 5. (366 aa)
	Myog	Myogenin. (224 aa)
	I79_004846	Voltage-dependent L-type calcium channel subunit alpha-1S. (998 aa)
	Plekho1	Pleckstrin-likey domain-containing family O member 1. (350 aa)
	Cdon	Cell adhesion molecule-related/down-regulated by oncogenes. (1254 aa)
	Bcl9	B-cell CLL/lymphoma 9 protein. (1399 aa)
	I79_004100	Fer-1-like protein 5. (57 aa)
	Fer1l5	Fer-1-like protein 5. (62 aa)
	I79_004098	Fer-1-like protein 5. (79 aa)
	Cav3	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family. (151 aa)
	Spg11	Spatacsin. (766 aa)
	Hoga1	Dihydrodipicolinate synthase-like, mitochondrial. (804 aa)
	Smo	Smoothened-like; Belongs to the G-protein coupled receptor Fz/Smo family. (984 aa)
	I79_002310	Actin, alpha skeletal muscle; Belongs to the actin family. (186 aa)
	I79_001953	Dedicator of cytokinesis protein 2; Belongs to the DOCK family. (763 aa)
	Pmp22	Peripheral myelin protein 22. (92 aa)
	Dock5	Dedicator of cytokinesis protein 5; Belongs to the DOCK family. (1446 aa)

Your Current Organism:

Cricetulus griseus

NCBI taxonomy Id: 10029
Other names: C. griseus, CHO cell lines, Chinese hamster, Chinese hamsters, Cricetulus aureus, Cricetulus barabensis griseus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Bcl9	I79_007063	G3H2Q7	G3H9I9	B-cell CLL/lymphoma 9 protein.	Hepatocyte growth factor receptor.	0.540
Cacna1s	Cav3	G3INH4	G3H113	Voltage-dependent L-type calcium channel subunit alpha-1S.	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	0.470
Cacna1s	I79_004846	G3INH4	G3H3J8	Voltage-dependent L-type calcium channel subunit alpha-1S.	Voltage-dependent L-type calcium channel subunit alpha-1S.	0.472
Cacna1s	I79_010748	G3INH4	G3HJA6	Voltage-dependent L-type calcium channel subunit alpha-1S.	Ryanodine receptor 1.	0.496
Cacna1s	I79_010749	G3INH4	G3HJA7	Voltage-dependent L-type calcium channel subunit alpha-1S.	Ryanodine receptor 1.	0.496
Cav2	Cav3	G3H9I7	G3H113	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	0.994
Cav2	Cd81	G3H9I7	G3HXZ3	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	Tetraspanin.	0.449
Cav2	I79_007063	G3H9I7	G3H9I9	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	Hepatocyte growth factor receptor.	0.441
Cav2	Itgb1	G3H9I7	G3HZ55	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	Integrin beta; Belongs to the integrin beta chain family.	0.926
Cav3	Cacna1s	G3H113	G3INH4	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	Voltage-dependent L-type calcium channel subunit alpha-1S.	0.470
Cav3	Cav2	G3H113	G3H9I7	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	0.994
Cav3	Cd81	G3H113	G3HXZ3	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	Tetraspanin.	0.461
Cav3	Dmd	G3H113	G3I0T8	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	Dystrophin.	0.611
Cav3	Fer1l5	G3H113	G3H1R7	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	Fer-1-like protein 5.	0.422
Cav3	Gsk3b	G3H113	G3HAI0	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	Glycogen synthase kinase-3 beta.	0.430
Cav3	I79_004098	G3H113	G3H1R6	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	Fer-1-like protein 5.	0.422
Cav3	I79_004100	G3H113	G3H1R8	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	Fer-1-like protein 5.	0.422
Cav3	I79_004846	G3H113	G3H3J8	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	Voltage-dependent L-type calcium channel subunit alpha-1S.	0.470
Cav3	I79_010748	G3H113	G3HJA6	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	Ryanodine receptor 1.	0.409
Cav3	I79_010749	G3H113	G3HJA7	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	Ryanodine receptor 1.	0.409