(82 nodes) Fatty acid transport network (Cricetulus griseus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Pla2g3	Group 3 secretory phospholipase A2. (398 aa)
	I79_017304	Long-chain fatty acid transport protein 6. (440 aa)
	PPARG	Peroxisome proliferator-activated receptor gamma; Nuclear receptor that binds peroxisome proliferators such as hypolipidemic drugs and fatty acids. Once activated by a ligand, the nuclear receptor binds to DNA specific PPAR response elements (PPRE) and modulates the transcription of its target genes, such as acyl-CoA oxidase. It therefore controls the peroxisomal beta-oxidation pathway of fatty acids. Key regulator of adipocyte differentiation and glucose homeostasis. ARF6 acts as a key regulator of the tissue-specific adipocyte P2 (aP2) enhancer. Acts as a critical regulator of gut ho [...] (402 aa)
	Pla2g2c	Phospholipase A(2). (123 aa)
	Pla2g2f	Phospholipase A(2). (176 aa)
	Pla2g2d	Phospholipase A(2). (118 aa)
	Pla2g5	Phospholipase A(2). (137 aa)
	Rbp2	Retinol-binding protein 2; Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family. (284 aa)
	Pla2g10	Phospholipase A(2). (140 aa)
	Pla2g4a	Phospholipase A2. (749 aa)
	I79_003501	Very long-chain acyl-CoA synthetase. (491 aa)
	I79_003549	D(3) dopamine receptor; Belongs to the G-protein coupled receptor 1 family. (421 aa)
	Crabp1	Cellular retinoic acid-binding protein 1; Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family. (137 aa)
	Pnpla8	Calcium-independent phospholipase A2-gamma. (777 aa)
	Pla2g4f	Phospholipase A2. (832 aa)
	Fabp3	Fatty acid-binding protein, heart; Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family. (121 aa)
	Drd2	D(2) dopamine receptor. (274 aa)
	Pla2g2e	Phospholipase A(2). (154 aa)
	I79_013971	ATP-binding cassette sub-family D member 1. (694 aa)
	I79_013946	Long-chain-fatty-acid--CoA ligase 4. (289 aa)
	Ppard	Peroxisome proliferator-activated receptor delta. (440 aa)
	Crot	Peroxisomal carnitine O-octanoyltransferase; Belongs to the carnitine/choline acetyltransferase family. (335 aa)
	Nmur2	Neuromedin-U receptor 2; Belongs to the G-protein coupled receptor 1 family. (291 aa)
	Slc27a1	Long-chain fatty acid transport protein 1. (218 aa)
	I79_004403	D(2) dopamine receptor; Belongs to the G-protein coupled receptor 1 family. (187 aa)
	Oc90	Phospholipase A(2). (177 aa)
	I79_025567	Phospholipase A(2). (119 aa)
	I79_025468	Phospholipase A(2). (302 aa)
	I79_025013	Carnitine O-palmitoyltransferase 1, muscle isoform. (265 aa)
	Cpt1b	Carnitine O-palmitoyltransferase 1, muscle isoform; Belongs to the carnitine/choline acetyltransferase family. (417 aa)
	I79_024861	Solute carrier family 22 member 9. (359 aa)
	I79_024651	Phospholipase A(2). (69 aa)
	I79_024555	Solute carrier family 22 member 25. (172 aa)
	Plin2	Perilipin; Belongs to the perilipin family. (432 aa)
	Acsl3	Long-chain-fatty-acid--CoA ligase 3. (709 aa)
	I79_023932	ATP-binding cassette sub-family D member 3. (572 aa)
	Abcd4	ATP-binding cassette sub-family D member 4. (113 aa)
	Nmb	Neuromedin-B. (55 aa)
	Slc25a17	Peroxisomal membrane protein PMP34; Belongs to the mitochondrial carrier (TC 2.A.29) family. (307 aa)
	Proca1	Protein PROCA1. (408 aa)
	Abcd2	ATP-binding cassette sub-family D member 2. (741 aa)
	Slc27a4	Long-chain fatty acid transport protein 4. (643 aa)
	I79_020013	Fatty acid-binding protein, intestinal; Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family. (132 aa)
	Fabp2	Fatty acid-binding protein, intestinal; Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family. (132 aa)
	Acsl1	Long-chain-fatty-acid--CoA ligase 1. (724 aa)
	LHCGR	Lutropin-choriogonadotropic hormone receptor; Receptor for lutropin-choriogonadotropic hormone. The activity of this receptor is mediated by G proteins which activate adenylate cyclase; Belongs to the G-protein coupled receptor 1 family. FSH/LSH/TSH subfamily. (688 aa)
	H671_1g1907	Sodium-coupled monocarboxylate transporter 1; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. (340 aa)
	Slc27a3	Long-chain fatty acid transport protein 3. (669 aa)
	Fabp6	Gastrotropin. (111 aa)
	I79_009207	KiSS-1 receptor. (303 aa)
	Slc2a1	Solute carrier family 2, facilitated glucose transporter member 1; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family. (486 aa)
	I79_019197	Phospholipase A(2). (118 aa)
	I79_019196	Phospholipase A(2). (134 aa)
	I79_019195	Phospholipase A(2). (123 aa)
	CgPICR_016639	Phospholipase A(2). (141 aa)
	I79_019193	Phospholipase A(2). (108 aa)
	I79_019192	Phospholipase A(2). (103 aa)
	I79_019191	Phospholipase A(2). (113 aa)
	Anxa1	Annexin. (346 aa)
	Fabp5	Fatty acid-binding protein, epidermal; Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family. (101 aa)
	I79_018327	Myelin P2 protein; Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family. (127 aa)
	Fabp4	Fatty acid-binding protein, adipocyte; Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family. (132 aa)
	I79_009503	Uncharacterized protein. (219 aa)
	Bdkrb2	B2 bradykinin receptor; Belongs to the G-protein coupled receptor 1 family. (367 aa)
	Abcc1	Multidrug resistance-associated protein 1. (146 aa)
	I79_010330	Hepatocyte nuclear factor 1-alpha. (668 aa)
	Pla2g12b	Group XIIB secretory phospholipase A2-like protein. (195 aa)
	Rps6kb1	Ribosomal protein S6 kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. S6 kinase subfamily. (502 aa)
	Fabp1	Fatty acid-binding protein, liver. (149 aa)
	Fabp7	Fatty acid-binding protein, brain; Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family. (218 aa)
	I79_011940	Platelet glycoprotein 4; Belongs to the CD36 family. (348 aa)
	Mfsd2a	Major facilitator superfamily domain-containing protein 2. (527 aa)
	Acsl4	Long-chain-fatty-acid--CoA ligase 4. (274 aa)
	Apoe	Apolipoprotein E. (313 aa)
	Fabp12	Putative fatty acid-binding protein ENSP00000353650-like; Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family. (122 aa)
	Drd4	D(4) dopamine receptor; Belongs to the G-protein coupled receptor 1 family. (387 aa)
	Slc43a3	Solute carrier family 43 member 3. (501 aa)
	Got2	Aspartate aminotransferase. (430 aa)
	Pla2g2a	Phospholipase A(2). (146 aa)
	Slc27a5	Bile acyl-CoA synthetase. (95 aa)
	I79_017702	Bile acyl-CoA synthetase. (341 aa)
	Erfe	Protein FAM132B. (344 aa)

Your Current Organism:

Cricetulus griseus

NCBI taxonomy Id: 10029
Other names: C. griseus, CHO cell lines, Chinese hamster, Chinese hamsters, Cricetulus aureus, Cricetulus barabensis griseus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Abcc1	Abcd4	G3HFM5	G3IHZ5	Multidrug resistance-associated protein 1.	ATP-binding cassette sub-family D member 4.	0.443
Abcd2	Abcd4	G3IFZ6	G3IHZ5	ATP-binding cassette sub-family D member 2.	ATP-binding cassette sub-family D member 4.	0.962
Abcd2	I79_003501	G3IFZ6	G3H053	ATP-binding cassette sub-family D member 2.	Very long-chain acyl-CoA synthetase.	0.478
Abcd2	I79_010330	G3IFZ6	G3HI63	ATP-binding cassette sub-family D member 2.	Hepatocyte nuclear factor 1-alpha.	0.463
Abcd2	I79_013971	G3IFZ6	G3HSX2	ATP-binding cassette sub-family D member 2.	ATP-binding cassette sub-family D member 1.	0.712
Abcd2	I79_023932	G3IFZ6	G3IJ99	ATP-binding cassette sub-family D member 2.	ATP-binding cassette sub-family D member 3.	0.766
Abcd2	Slc25a17	G3IFZ6	G3IGY2	ATP-binding cassette sub-family D member 2.	Peroxisomal membrane protein PMP34; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.677
Abcd4	Abcc1	G3IHZ5	G3HFM5	ATP-binding cassette sub-family D member 4.	Multidrug resistance-associated protein 1.	0.443
Abcd4	Abcd2	G3IHZ5	G3IFZ6	ATP-binding cassette sub-family D member 4.	ATP-binding cassette sub-family D member 2.	0.962
Abcd4	I79_013971	G3IHZ5	G3HSX2	ATP-binding cassette sub-family D member 4.	ATP-binding cassette sub-family D member 1.	0.706
Abcd4	Slc25a17	G3IHZ5	G3IGY2	ATP-binding cassette sub-family D member 4.	Peroxisomal membrane protein PMP34; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.702
Acsl1	Acsl3	G3I8X2	G3IK12	Long-chain-fatty-acid--CoA ligase 1.	Long-chain-fatty-acid--CoA ligase 3.	0.968
Acsl1	Acsl4	G3I8X2	G3HNN8	Long-chain-fatty-acid--CoA ligase 1.	Long-chain-fatty-acid--CoA ligase 4.	0.951
Acsl1	Anxa1	G3I8X2	G3I5L3	Long-chain-fatty-acid--CoA ligase 1.	Annexin.	0.468
Acsl1	Cpt1b	G3I8X2	G3IM78	Long-chain-fatty-acid--CoA ligase 1.	Carnitine O-palmitoyltransferase 1, muscle isoform; Belongs to the carnitine/choline acetyltransferase family.	0.948
Acsl1	Fabp3	G3I8X2	G3H1W8	Long-chain-fatty-acid--CoA ligase 1.	Fatty acid-binding protein, heart; Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family.	0.413
Acsl1	Fabp4	G3I8X2	G3I4E8	Long-chain-fatty-acid--CoA ligase 1.	Fatty acid-binding protein, adipocyte; Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family.	0.456
Acsl1	Got2	G3I8X2	G3I2Y1	Long-chain-fatty-acid--CoA ligase 1.	Aspartate aminotransferase.	0.406
Acsl1	I79_003501	G3I8X2	G3H053	Long-chain-fatty-acid--CoA ligase 1.	Very long-chain acyl-CoA synthetase.	0.591
Acsl1	I79_011940	G3I8X2	G3HMH7	Long-chain-fatty-acid--CoA ligase 1.	Platelet glycoprotein 4; Belongs to the CD36 family.	0.525