20 items (Cricetulus griseus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	I79_025900	Beta-1-syntrophin. (203 aa)
	Cav3	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family. (151 aa)
	Utrn	Utrophin. (3291 aa)
	Dag1	Dystroglycan. (893 aa)
	I79_006769	Gamma-sarcoglycan. (257 aa)
	I79_007478	Alpha-1-syntrophin. (344 aa)
	Sntg2	Gamma-2-syntrophin. (559 aa)
	Sntg1	Gamma-1-syntrophin. (128 aa)
	I79_009066	Keratin, type II cytoskeletal 8; Belongs to the intermediate filament family. (426 aa)
	Sgca	Alpha-sarcoglycan. (127 aa)
	I79_011325	Beta-2-syntrophin. (203 aa)
	I79_014103	Epsilon-sarcoglycan. (328 aa)
	Sspn	Sarcospan. (216 aa)
	Dmd	Dystrophin. (617 aa)
	I79_016980	Dystrophin. (193 aa)
	Sgcd	Delta-sarcoglycan. (140 aa)
	I79_019825	Keratin, type I cytoskeletal 19; Belongs to the intermediate filament family. (403 aa)
	I79_022161	Dystrophin. (655 aa)
	Pgm5	Phosphoglucomutase-like protein 5; Belongs to the phosphohexose mutase family. (480 aa)
	Krt8	Keratin, type II cytoskeletal 8; Belongs to the intermediate filament family. (488 aa)

Your Current Organism:

Cricetulus griseus

NCBI taxonomy Id: 10029
Other names: C. griseus, CHO cell lines, Chinese hamster, Chinese hamsters, Cricetulus aureus, Cricetulus barabensis griseus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Cav3	Dag1	G3H113	G3H8F4	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	Dystroglycan.	0.733
Cav3	Dmd	G3H113	G3I0T8	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	Dystrophin.	0.611
Cav3	I79_006769	G3H113	G3H8Q9	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	Gamma-sarcoglycan.	0.630
Cav3	I79_007478	G3H113	G3HAM2	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	Alpha-1-syntrophin.	0.750
Cav3	I79_014103	G3H113	G3HT82	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	Epsilon-sarcoglycan.	0.536
Cav3	I79_016980	G3H113	G3I0T9	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	Dystrophin.	0.496
Cav3	I79_022161	G3H113	G3IEL2	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	Dystrophin.	0.611
Cav3	Sgca	G3H113	G3HJR2	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	Alpha-sarcoglycan.	0.632
Cav3	Sgcd	G3H113	G3I3C1	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	Delta-sarcoglycan.	0.730
Cav3	Sspn	G3H113	G3HXQ2	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	Sarcospan.	0.634
Cav3	Utrn	G3H113	G3H6X6	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	Utrophin.	0.446
Dag1	Cav3	G3H8F4	G3H113	Dystroglycan.	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	0.733
Dag1	Dmd	G3H8F4	G3I0T8	Dystroglycan.	Dystrophin.	0.976
Dag1	I79_006769	G3H8F4	G3H8Q9	Dystroglycan.	Gamma-sarcoglycan.	0.811
Dag1	I79_007478	G3H8F4	G3HAM2	Dystroglycan.	Alpha-1-syntrophin.	0.640
Dag1	I79_011325	G3H8F4	G3HKU3	Dystroglycan.	Beta-2-syntrophin.	0.462
Dag1	I79_014103	G3H8F4	G3HT82	Dystroglycan.	Epsilon-sarcoglycan.	0.655
Dag1	I79_016980	G3H8F4	G3I0T9	Dystroglycan.	Dystrophin.	0.621
Dag1	I79_022161	G3H8F4	G3IEL2	Dystroglycan.	Dystrophin.	0.772
Dag1	I79_025900	G3H8F4	G3IPI9	Dystroglycan.	Beta-1-syntrophin.	0.531