STRINGSTRING
Snrpb2 Snrpb2 Ddx39b Ddx39b Snrnp70 Snrnp70 Tut1 Tut1 Rbm7 Rbm7 Prpf31 Prpf31 Snrnp35 Snrnp35 I79_018866 I79_018866 Mepce Mepce I79_024174 I79_024174 Ccnt1 Ccnt1 I79_025570 I79_025570 I79_026256 I79_026256 I79_025672 I79_025672 I79_025821 I79_025821 I79_025858 I79_025858 I79_025881 I79_025881 I79_025983 I79_025983 Isg20 Isg20 Larp7 Larp7 I79_022290 I79_022290 I79_022499 I79_022499 Mettl16 Mettl16 Rbm41 Rbm41 Cdk9 Cdk9 Ro60 Ro60 I79_013671 I79_013671 I79_012406 I79_012406 Hexim2 Hexim2 Hexim1 Hexim1 Eftud2 Eftud2 Prpf4 Prpf4 I79_009465 I79_009465 Lsm11 Lsm11 CgPICR_006483 CgPICR_006483 Sf3b3 Sf3b3 Lsm10 Lsm10 Hnrnpu Hnrnpu Ddx21 Ddx21 Snrpa1 Snrpa1 LSM4 LSM4 Ccnt2 Ccnt2 Toe1 Toe1 Eif5a Eif5a I79_001965 I79_001965 Ncbp2 Ncbp2 LSM3 LSM3 H671_1g1421 H671_1g1421 Lrrc51 Lrrc51 I79_024025 I79_024025 Prpf8 Prpf8 I79_026056 I79_026056 I79_024092 I79_024092 I79_014984 I79_014984 I79_015608 I79_015608 I79_015891 I79_015891 Snrpd3 Snrpd3
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Snrpb2U2 small nuclear ribonucleoprotein B. (180 aa)
Ddx39bSpliceosome RNA helicase BAT1. (288 aa)
Snrnp70U1 small nuclear ribonucleoprotein 70 kDa. (445 aa)
Tut1Speckle targeted PIP5K1A-regulated poly(A) polymerase-like protein. (861 aa)
Rbm7RNA-binding protein 7. (265 aa)
Prpf31U4/U6 small nuclear ribonucleoprotein Prp31. (441 aa)
Snrnp35U11/U12 small nuclear ribonucleoprotein 35 kDa protein. (246 aa)
I79_018866U7 snRNA-associated Sm-like protein LSm10. (73 aa)
Mepce7SK snRNA methylphosphate capping enzyme. (473 aa)
I79_024174U1 small nuclear ribonucleoprotein A. (104 aa)
Ccnt1Cyclin-T1; Belongs to the cyclin family. (729 aa)
I79_025570Spliceosome RNA helicase Bat1. (229 aa)
I79_026256Spliceosome RNA helicase Bat1. (103 aa)
I79_025672Spliceosome RNA helicase BAT1. (155 aa)
I79_025821Pre-mRNA-processing-splicing factor 8. (264 aa)
I79_025858Spliceosome RNA helicase BAT1. (66 aa)
I79_025881Pre-mRNA-processing-splicing factor 8. (318 aa)
I79_025983Pre-mRNA-processing-splicing factor 8. (197 aa)
Isg20Interferon-stimulated gene 20 kDa protein. (174 aa)
Larp7La-related protein 7. (217 aa)
I79_022290U2 small nuclear ribonucleoprotein B. (113 aa)
I79_022499Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (88 aa)
Mettl16U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase; RNA N6-methyltransferase that methylates adenosine residues of a subset of RNAs and plays a key role in S-adenosyl-L-methionine homeostasis by regulating expression of MAT2A transcripts. Able to N6- methylate a subset of mRNAs and U6 small nuclear RNAs (U6 snRNAs). In contrast to the METTL3-METTL14 heterodimer, only able to methylate a limited number of RNAs: requires both a 5'UACAGAGAA-3' nonamer sequence and a specific RNA structure. In presence of S-adenosyl-L-methionine, binds the 3'-UTR region of MAT2A mRNA and specifical [...] (553 aa)
Rbm41RNA-binding protein 41. (385 aa)
Cdk9Cell division protein kinase 9; Belongs to the protein kinase superfamily. (372 aa)
Ro6060 kDa SS-A/Ro ribonucleoprotein. (503 aa)
I79_013671Pre-mRNA-splicing factor RBM22. (241 aa)
I79_012406U1 small nuclear ribonucleoprotein A. (291 aa)
Hexim2Protein HEXIM2. (313 aa)
Hexim1Protein HEXIM1. (356 aa)
Eftud2116 kDa U5 small nuclear ribonucleoprotein component. (972 aa)
Prpf4U4/U6 small nuclear ribonucleoprotein Prp4. (521 aa)
I79_009465Gem-associated protein 5. (1001 aa)
Lsm11U7 snRNA-associated Sm-like protein LSm11. (211 aa)
CgPICR_006483Eukaryotic translation initiation factor 5A-1. (128 aa)
Sf3b3Splicing factor 3B subunit 3. (1217 aa)
Lsm10U7 snRNA-associated Sm-like protein LSm10. (122 aa)
HnrnpuHeterogeneous nuclear ribonucleoprotein U. (512 aa)
Ddx21Nucleolar RNA helicase 2. (729 aa)
Snrpa1U2 small nuclear ribonucleoprotein A. (95 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (124 aa)
Ccnt2Cyclin-T2; Belongs to the cyclin family. (724 aa)
Toe1Target of EGR1 protein 1. (511 aa)
Eif5aEukaryotic translation initiation factor 5A-1. (76 aa)
I79_001965La-related protein 7. (146 aa)
Ncbp2Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (156 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (103 aa)
H671_1g1421CUGBP Elav-like family member 3 isoform 1. (447 aa)
Lrrc51Leucine-rich repeat-containing protein 51-like isoform 2. (192 aa)
I79_024025NHP2-like protein 1. (73 aa)
Prpf8Pre-mRNA-processing-splicing factor 8. (365 aa)
I79_026056Pre-mRNA-processing-splicing factor 8. (184 aa)
I79_024092Pre-mRNA-processing-splicing factor 8. (189 aa)
I79_014984Squamous cell carcinoma antigen recognized by T-cells 3. (803 aa)
I79_015608RNA-binding protein 7. (157 aa)
I79_015891Eukaryotic translation initiation factor 5A. (66 aa)
Snrpd3Small nuclear ribonucleoprotein Sm D3. (84 aa)
Your Current Organism:
Cricetulus griseus
NCBI taxonomy Id: 10029
Other names: C. griseus, CHO cell lines, Chinese hamster, Chinese hamsters, Cricetulus aureus, Cricetulus barabensis griseus
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