(47 nodes) Ventral spinal cord development network (Cricetulus griseus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Gata2	Endothelial transcription factor GATA-2. (480 aa)
	Sufu	Suppressor of fused-like. (266 aa)
	Gli3	Zinc finger protein GLI3. (1582 aa)
	Hoxc10	Homeobox protein Hox-C10. (299 aa)
	Vstm5	Uncharacterized protein C11orf90-like. (199 aa)
	Foxn4	Forkhead box protein N4. (484 aa)
	Dbx1	Homeobox protein DBX1. (335 aa)
	Abt1	Activator of basal transcription 1. (273 aa)
	I79_008360	Voltage-dependent P/Q-type calcium channel subunit alpha-1A. (79 aa)
	I79_008358	Voltage-dependent P/Q-type calcium channel subunit alpha; Voltage-sensitive calcium channels (VSCC) mediate the entry of calcium ions into excitable cells and are also involved in a variety of calcium-dependent processes, including muscle contraction, hormone or neurotransmitter release, gene expression, cell motility, cell division and cell death. The isoform alpha-1A gives rise to P and/or Q- type calcium currents. (1774 aa)
	Gbx1	Homeobox protein GBX-1. (202 aa)
	Lhx1	LIM/homeobox protein Lhx1. (84 aa)
	I79_006317	LIM/homeobox protein Lhx4. (397 aa)
	I79_006225	Sonic hedgehog protein. (226 aa)
	Ascl1	Achaete-scute-like 1. (140 aa)
	Nfe2l1	Nuclear factor erythroid 2-related factor 1. (740 aa)
	I79_004272	Tectonic-1. (394 aa)
	Isl1	Insulin gene enhancer protein ISL-1. (257 aa)
	Hoxd4	Homeobox protein Hox-D10. (371 aa)
	Gli2	Zinc finger protein GLI2. (1547 aa)
	Isl2	Insulin gene enhancer protein ISL-2. (200 aa)
	Cln8	Protein CLN8. (323 aa)
	Pax6	Paired box protein Pax-6. (544 aa)
	Ift172	Intraflagellar transport protein 172-like. (1340 aa)
	Olig3	Oligodendrocyte transcription factor 3. (273 aa)
	I79_001475	Cytoplasmic dynein 2 heavy chain 1. (1690 aa)
	Dync2h1	Cytoplasmic dynein 2 heavy chain 1. (117 aa)
	I79_001015	Low-density lipoprotein receptor-related protein 8. (764 aa)
	Foxp1	Forkhead box protein P1. (696 aa)
	I79_025297	Very low-density lipoprotein receptor. (558 aa)
	Ptch1	Protein patched-like 1. (1114 aa)
	I79_024066	Doublesex-and mab-3-related transcription factor 3. (415 aa)
	Scyl1	SCYL1. (805 aa)
	I79_021692	Transcription factor LBX1. (90 aa)
	I79_021503	Paired mesoderm homeobox protein 2A. (139 aa)
	Dll4	Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling. (578 aa)
	Gigyf2	PERQ amino acid-rich with GYF domain-containing protein 2. (1298 aa)
	I79_019613	Dynactin subunit 1. (163 aa)
	Dctn1	Dynactin subunit 1. (559 aa)
	Mnx1	Motor neuron and pancreas homeobox protein 1. (226 aa)
	I79_019340	Suppressor of fused-like. (144 aa)
	Lhx3	LIM/homeobox protein Lhx3. (403 aa)
	Mdga2	MAM domain-containing glycosylphosphatidylinositol anchor protein 2. (414 aa)
	Tbx20	T-box transcription factor TBX20. (445 aa)
	Dicer1	Endoribonuclease Dicer; Belongs to the helicase family. Dicer subfamily. (1907 aa)
	I79_016169	Protein-associating with the carboxyl-terminal domain of ezrin. (104 aa)
	Scyl3	Protein-associating with the carboxyl-terminal domain of ezrin. (512 aa)

Your Current Organism:

Cricetulus griseus

NCBI taxonomy Id: 10029
Other names: C. griseus, CHO cell lines, Chinese hamster, Chinese hamsters, Cricetulus aureus, Cricetulus barabensis griseus

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Ascl1	Isl1	G3H670	G3H207	Achaete-scute-like 1.	Insulin gene enhancer protein ISL-1.	0.529
Ascl1	Isl2	G3H670	G3H0D0	Achaete-scute-like 1.	Insulin gene enhancer protein ISL-2.	0.461
Dbx1	Nfe2l1	G3HE41	G3H5T8	Homeobox protein DBX1.	Nuclear factor erythroid 2-related factor 1.	0.437
Dbx1	Olig3	G3HE41	G3GW62	Homeobox protein DBX1.	Oligodendrocyte transcription factor 3.	0.527
Dctn1	Dync2h1	G3I7W3	G3GUU9	Dynactin subunit 1.	Cytoplasmic dynein 2 heavy chain 1.	0.571
Dctn1	I79_001475	G3I7W3	G3GUV0	Dynactin subunit 1.	Cytoplasmic dynein 2 heavy chain 1.	0.571
Dctn1	I79_019613	G3I7W3	G3I7W4	Dynactin subunit 1.	Dynactin subunit 1.	0.900
Dll4	Foxn4	G3ICK3	G3HI84	Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling.	Forkhead box protein N4.	0.413
Dync2h1	Dctn1	G3GUU9	G3I7W3	Cytoplasmic dynein 2 heavy chain 1.	Dynactin subunit 1.	0.571
Dync2h1	Gli3	G3GUU9	G3HVA3	Cytoplasmic dynein 2 heavy chain 1.	Zinc finger protein GLI3.	0.408
Dync2h1	I79_001475	G3GUU9	G3GUV0	Cytoplasmic dynein 2 heavy chain 1.	Cytoplasmic dynein 2 heavy chain 1.	0.913
Dync2h1	I79_019613	G3GUU9	G3I7W4	Cytoplasmic dynein 2 heavy chain 1.	Dynactin subunit 1.	0.571
Dync2h1	Ift172	G3GUU9	G3GWA1	Cytoplasmic dynein 2 heavy chain 1.	Intraflagellar transport protein 172-like.	0.528
Foxn4	Dll4	G3HI84	G3ICK3	Forkhead box protein N4.	Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling.	0.413
Gata2	Isl1	G3HIC9	G3H207	Endothelial transcription factor GATA-2.	Insulin gene enhancer protein ISL-1.	0.423
Gata2	Isl2	G3HIC9	G3H0D0	Endothelial transcription factor GATA-2.	Insulin gene enhancer protein ISL-2.	0.423
Gata2	Lhx3	G3HIC9	G3I6Y3	Endothelial transcription factor GATA-2.	LIM/homeobox protein Lhx3.	0.429
Gli2	Gli3	G3H142	G3HVA3	Zinc finger protein GLI2.	Zinc finger protein GLI3.	0.968
Gli2	I79_006225	G3H142	G3H796	Zinc finger protein GLI2.	Sonic hedgehog protein.	0.698
Gli2	I79_019340	G3H142	G3I755	Zinc finger protein GLI2.	Suppressor of fused-like.	0.892