(69 nodes) Telencephalon cell migration network (Cricetulus griseus)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	I79_021836	Leucine-rich repeat serine/threonine-protein kinase 2. (1184 aa)
	I79_008941	Receptor protein-tyrosine kinase. (962 aa)
	Bmerb1	Uncharacterized protein C16orf45-like. (203 aa)
	P2ry12	p2Y purinoceptor 12. (345 aa)
	Nrg3	Pro-neuregulin-3, membrane-bound isoform. (153 aa)
	Rtn4	Reticulon-4. (806 aa)
	I79_010923	Reticulon. (68 aa)
	I79_010159	Roundabout-like 1. (1362 aa)
	Robo1	Roundabout-like 1. (129 aa)
	I79_010003	Zinc finger MIZ domain-containing protein 1. (960 aa)
	Mdga1	MAM domain-containing glycosylphosphatidylinositol anchor protein 1. (985 aa)
	Psen1	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family. (467 aa)
	Htr6	5-hydroxytryptamine receptor 6; Belongs to the G-protein coupled receptor 1 family. (406 aa)
	I79_014451	Pro-neuregulin-1, membrane-bound isoform. (639 aa)
	Sun1	Protein unc-84-like A. (916 aa)
	Gli3	Zinc finger protein GLI3. (1582 aa)
	PAFAH1B1	Platelet-activating factor acetylhydrolase IB subunit alpha; Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes such as the maintenance of Golgi integrity, the peripheral transport of microtubule fragments and the coupling of the nucleus and centrosome. Required during brain development for the proliferation of neuronal precursors and the migration of newly formed neurons from the ven [...] (410 aa)
	I79_015319	Cyclin-dependent kinase 5 activator 2. (97 aa)
	Dab2ip	Disabled-like 2-interacting protein. (1065 aa)
	H671_xg20591	Homeobox protein ARX-like protein. (279 aa)
	Srf	Serum response factor. (361 aa)
	Cul5	Cullin-5; Belongs to the cullin family. (780 aa)
	Efhc1	EF-hand domain-containing protein 1. (662 aa)
	Lamb1	Laminin subunit beta-1. (1617 aa)
	Sun2	Protein unc-84-like B. (730 aa)
	Mboat7	Lysophospholipid acyltransferase 7; Belongs to the membrane-bound acyltransferase family. (126 aa)
	I79_017851	Lysophospholipid acyltransferase 7. (277 aa)
	Adgrg1	G-protein coupled receptor 56; Belongs to the G-protein coupled receptor 2 family. (688 aa)
	Cxcl12	Stromal cell-derived factor 1. (89 aa)
	Pex13	Peroxisomal membrane protein PEX13. (376 aa)
	Lhx6	LIM/homeobox protein Lhx6. (363 aa)
	I79_021835	Leucine-rich repeat serine/threonine-protein kinase 2. (354 aa)
	Cdk5	Cell division protein kinase 5; Belongs to the protein kinase superfamily. (292 aa)
	I79_021837	Leucine-rich repeat serine/threonine-protein kinase 2. (441 aa)
	I79_022078	Homeobox protein Nkx-2.1. (190 aa)
	I79_022271	Ras-related C3 botulinum toxin substrate 2. (178 aa)
	I79_024593	Uncharacterized protein. (194 aa)
	Col3a1	Collagen alpha-1(III) chain. (1051 aa)
	I79_025170	Slit-like 2 protein. (345 aa)
	Ctnnb1	Catenin beta-1. (781 aa)
	CgPICR_006170	Fez family zinc finger protein 2. (455 aa)
	I79_006190	Uncharacterized protein. (240 aa)
	Syne2	Nesprin-2. (1667 aa)
	Srgap2	SLIT-ROBO Rho GTPase-activating protein 2. (858 aa)
	I79_005354	Nesprin-2. (54 aa)
	I79_005353	Nesprin-2. (903 aa)
	I79_004403	D(2) dopamine receptor; Belongs to the G-protein coupled receptor 1 family. (187 aa)
	Drd2	D(2) dopamine receptor. (274 aa)
	Dixdc1	Dixin. (689 aa)
	I79_004031	Fibroblast growth factor receptor. (731 aa)
	Drd1	D(1A) dopamine receptor; Belongs to the G-protein coupled receptor 1 family. (448 aa)
	Fut10	Alpha-(1,3)-fucosyltransferase 10. (349 aa)
	I79_003408	Slit-like 1 protein. (1482 aa)
	Cxcr4	C-X-C chemokine receptor type 4; Belongs to the G-protein coupled receptor 1 family. (290 aa)
	Tnr	Tenascin-R. (1358 aa)
	Arl13b	ADP-ribosylation factor-like protein 13B. (422 aa)
	Ndel1	Nuclear distribution protein nudE-like 1. (345 aa)
	I79_002496	Nuclear receptor subfamily 2 group E member 1. (323 aa)
	I79_002288	Disrupted in schizophrenia 1-like. (648 aa)
	Rac1	Ras-related C3 botulinum toxin substrate 1. (148 aa)
	Pex5	Peroxisomal targeting signal 1 receptor. (640 aa)
	I79_001015	Low-density lipoprotein receptor-related protein 8. (764 aa)
	Fbxo45	F-box/SPRY domain-containing protein 1. (51 aa)
	Foxb1	Forkhead box protein B1. (325 aa)
	Cntn2	Contactin-2. (1008 aa)
	I79_007605	SLIT-ROBO Rho GTPase-activating protein 2. (191 aa)
	I79_007641	Low-density lipoprotein receptor-related protein 6. (543 aa)
	Lrp6	Low-density lipoprotein receptor-related protein 6. (565 aa)
	Fgf13	Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (117 aa)

Your Current Organism:

Cricetulus griseus

NCBI taxonomy Id: 10029
Other names: C. griseus, CHO cell lines, Chinese hamster, Chinese hamsters, Cricetulus aureus, Cricetulus barabensis griseus

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Arl13b	Gli3	G3GYG1	G3HVA3	ADP-ribosylation factor-like protein 13B.	Zinc finger protein GLI3.	0.739
Cdk5	I79_015319	G3HB69	G3HWG2	Cell division protein kinase 5; Belongs to the protein kinase superfamily.	Cyclin-dependent kinase 5 activator 2.	0.996
Cdk5	Ndel1	G3HB69	G3GY45	Cell division protein kinase 5; Belongs to the protein kinase superfamily.	Nuclear distribution protein nudE-like 1.	0.658
Cdk5	Psen1	G3HB69	G3HNF2	Cell division protein kinase 5; Belongs to the protein kinase superfamily.	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.	0.577
Col3a1	Cxcl12	G3IM20	G3I6P7	Collagen alpha-1(III) chain.	Stromal cell-derived factor 1.	0.468
Col3a1	Mdga1	G3IM20	G3HKE7	Collagen alpha-1(III) chain.	MAM domain-containing glycosylphosphatidylinositol anchor protein 1.	0.504
Ctnnb1	I79_004031	G3H996	G3H1K2	Catenin beta-1.	Fibroblast growth factor receptor.	0.690
Ctnnb1	I79_007641	G3H996	G3HB26	Catenin beta-1.	Low-density lipoprotein receptor-related protein 6.	0.686
Ctnnb1	I79_008941	G3H996	G3HEF7	Catenin beta-1.	Receptor protein-tyrosine kinase.	0.707
Ctnnb1	I79_022271	G3H996	G3IEW6	Catenin beta-1.	Ras-related C3 botulinum toxin substrate 2.	0.588
Ctnnb1	Lrp6	G3H996	G3HB27	Catenin beta-1.	Low-density lipoprotein receptor-related protein 6.	0.686
Ctnnb1	Psen1	G3H996	G3HNF2	Catenin beta-1.	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.	0.982
Ctnnb1	Rac1	G3H996	G3GVB5	Catenin beta-1.	Ras-related C3 botulinum toxin substrate 1.	0.588
Cul5	Fbxo45	G3I0C6	G3GSL1	Cullin-5; Belongs to the cullin family.	F-box/SPRY domain-containing protein 1.	0.768
Cxcl12	Col3a1	G3I6P7	G3IM20	Stromal cell-derived factor 1.	Collagen alpha-1(III) chain.	0.468
Cxcl12	Cxcr4	G3I6P7	G3GZR2	Stromal cell-derived factor 1.	C-X-C chemokine receptor type 4; Belongs to the G-protein coupled receptor 1 family.	0.999
Cxcl12	Fgf13	G3I6P7	G3HB47	Stromal cell-derived factor 1.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.492
Cxcl12	I79_008941	G3I6P7	G3HEF7	Stromal cell-derived factor 1.	Receptor protein-tyrosine kinase.	0.615
Cxcl12	Robo1	G3I6P7	G3HHQ2	Stromal cell-derived factor 1.	Roundabout-like 1.	0.454
Cxcr4	Cxcl12	G3GZR2	G3I6P7	C-X-C chemokine receptor type 4; Belongs to the G-protein coupled receptor 1 family.	Stromal cell-derived factor 1.	0.999