(18 nodes) Lipid glycosylation network (Cricetulus griseus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	I79_022703	CMP-N-acetylneuraminate-beta-galactosamide-alpha-2, 3-sialyltransferase; Belongs to the glycosyltransferase 29 family. (172 aa)
	I79_015605	N-acetyllactosaminide alpha-1,3-galactosyltransferase. (109 aa)
	Tmem130	Transmembrane protein 130. (461 aa)
	Abo	Histo-blood group ABO system transferase 1. (279 aa)
	CgPICR_021333	Histo-blood group ABO system transferase 1-like protein. (354 aa)
	I79_015201	Beta-1,4 N-acetylgalactosaminyltransferase 1. (404 aa)
	B3galt1	Hexosyltransferase. (326 aa)
	Gba2	Non-lysosomal glucosylceramidase. (226 aa)
	I79_011998	GDP-fucose transporter 1. (178 aa)
	Gbgt1	Globoside alpha-1,3-N-acetylgalactosaminyltransferase 1. (278 aa)
	I79_023920	Glycosyltransferase 6 domain-containing protein 1. (160 aa)
	I79_025547	Histo-blood group ABO system transferase 1. (235 aa)
	B4galnt2	Beta-1,4 N-acetylgalactosaminyltransferase 2. (104 aa)
	St3gal4	CMP-N-acetylneuraminate-beta-galactosamide-alpha-2, 3-sialyltransferase; Belongs to the glycosyltransferase 29 family. (359 aa)
	Gba	Glucosylceramidase. (515 aa)
	St3gal2	CMP-N-acetylneuraminate-beta-galactosamide-alpha-2, 3-sialyltransferase; Belongs to the glycosyltransferase 29 family. (178 aa)
	A3galt2	Alpha 1,3-galactosyltransferase 2. (325 aa)
	Slc35c1	GDP-fucose transporter 1. (365 aa)

Your Current Organism:

Cricetulus griseus

NCBI taxonomy Id: 10029
Other names: C. griseus, CHO cell lines, Chinese hamster, Chinese hamsters, Cricetulus aureus, Cricetulus barabensis griseus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Abo	CgPICR_021333	G3I9S6	G3IBD3	Histo-blood group ABO system transferase 1.	Histo-blood group ABO system transferase 1-like protein.	0.902
B3galt1	B4galnt2	G3HUD9	G3HJN7	Hexosyltransferase.	Beta-1,4 N-acetylgalactosaminyltransferase 2.	0.435
B3galt1	St3gal4	G3HUD9	G3HFJ0	Hexosyltransferase.	CMP-N-acetylneuraminate-beta-galactosamide-alpha-2, 3-sialyltransferase; Belongs to the glycosyltransferase 29 family.	0.928
B4galnt2	B3galt1	G3HJN7	G3HUD9	Beta-1,4 N-acetylgalactosaminyltransferase 2.	Hexosyltransferase.	0.435
CgPICR_021333	Abo	G3IBD3	G3I9S6	Histo-blood group ABO system transferase 1-like protein.	Histo-blood group ABO system transferase 1.	0.902
Gba	Gba2	G3HC47	G3HN00	Glucosylceramidase.	Non-lysosomal glucosylceramidase.	0.955
Gba2	Gba	G3HN00	G3HC47	Non-lysosomal glucosylceramidase.	Glucosylceramidase.	0.955
I79_015605	I79_023920	G3HX86	G3IJ87	N-acetyllactosaminide alpha-1,3-galactosyltransferase.	Glycosyltransferase 6 domain-containing protein 1.	0.453
I79_022703	St3gal2	G3IG26	G3HAF1	CMP-N-acetylneuraminate-beta-galactosamide-alpha-2, 3-sialyltransferase; Belongs to the glycosyltransferase 29 family.	CMP-N-acetylneuraminate-beta-galactosamide-alpha-2, 3-sialyltransferase; Belongs to the glycosyltransferase 29 family.	0.791
I79_023920	I79_015605	G3IJ87	G3HX86	Glycosyltransferase 6 domain-containing protein 1.	N-acetyllactosaminide alpha-1,3-galactosyltransferase.	0.453
St3gal2	I79_022703	G3HAF1	G3IG26	CMP-N-acetylneuraminate-beta-galactosamide-alpha-2, 3-sialyltransferase; Belongs to the glycosyltransferase 29 family.	CMP-N-acetylneuraminate-beta-galactosamide-alpha-2, 3-sialyltransferase; Belongs to the glycosyltransferase 29 family.	0.791
St3gal4	B3galt1	G3HFJ0	G3HUD9	CMP-N-acetylneuraminate-beta-galactosamide-alpha-2, 3-sialyltransferase; Belongs to the glycosyltransferase 29 family.	Hexosyltransferase.	0.928