(31 nodes) Collagen catabolic process network (Cricetulus griseus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Mmp17	Matrix metalloproteinase-17. (213 aa)
	Mmp24	Matrix metalloproteinase-24. (140 aa)
	I79_025440	Cathepsin L1; Belongs to the peptidase C1 family. (333 aa)
	I79_024192	Matrix metalloproteinase-23. (358 aa)
	I79_023309	Cathepsin M; Belongs to the peptidase C1 family. (333 aa)
	Mmp21	Matrix metalloproteinase-21. (567 aa)
	Testin-2	Testin-2; Belongs to the peptidase C1 family. (401 aa)
	I79_020067	Xaa-Pro dipeptidase. (196 aa)
	Mmp28	Matrix metalloproteinase-28. (263 aa)
	I79_019777	Matrix metalloproteinase-28. (253 aa)
	Mmp15	Matrix metalloproteinase-15. (555 aa)
	Mmp25	Matrix metalloproteinase-25. (413 aa)
	Mmp11	Stromelysin-3. (361 aa)
	Retreg2	Protein FAM134A. (457 aa)
	I79_014551	Matrix metalloproteinase-16. (394 aa)
	Mmp19	Matrix metalloproteinase-19. (525 aa)
	I79_013395	Matrix metalloproteinase-14. (539 aa)
	I79_001476	Collagenase 3. (300 aa)
	Mmp12	Macrophage metalloelastase. (464 aa)
	Retreg1	Protein FAM134B. (397 aa)
	Retreg3	Protein FAM134C. (466 aa)
	Mrc2	C-type mannose receptor 2. (1430 aa)
	Mmp10	Stromelysin-2. (966 aa)
	I79_001479	Matrix metalloproteinase-20. (184 aa)
	Adam15	Disintegrin and metalloproteinase domain-containing protein 15. (844 aa)
	I79_007509	Matrix metalloproteinase-24. (552 aa)
	Mmp9	Matrix metalloproteinase-9. (710 aa)
	I79_004580	Cathepsin K. (68 aa)
	Ctsk	Cathepsin K. (87 aa)
	Mmp2	72 kDa type IV collagenase. (662 aa)
	Ctsb	Cathepsin B; Belongs to the peptidase C1 family. (339 aa)

Your Current Organism:

Cricetulus griseus

NCBI taxonomy Id: 10029
Other names: C. griseus, CHO cell lines, Chinese hamster, Chinese hamsters, Cricetulus aureus, Cricetulus barabensis griseus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Ctsb	Ctsk	G3H0L9	G3H2X4	Cathepsin B; Belongs to the peptidase C1 family.	Cathepsin K.	0.621
Ctsb	I79_004580	G3H0L9	G3H2X5	Cathepsin B; Belongs to the peptidase C1 family.	Cathepsin K.	0.622
Ctsb	I79_023309	G3H0L9	G3IHL7	Cathepsin B; Belongs to the peptidase C1 family.	Cathepsin M; Belongs to the peptidase C1 family.	0.437
Ctsb	I79_025440	G3H0L9	G3INC5	Cathepsin B; Belongs to the peptidase C1 family.	Cathepsin L1; Belongs to the peptidase C1 family.	0.960
Ctsb	Mmp9	G3H0L9	G3H8V1	Cathepsin B; Belongs to the peptidase C1 family.	Matrix metalloproteinase-9.	0.641
Ctsb	Testin-2	G3H0L9	G3IEV8	Cathepsin B; Belongs to the peptidase C1 family.	Testin-2; Belongs to the peptidase C1 family.	0.454
Ctsk	Ctsb	G3H2X4	G3H0L9	Cathepsin K.	Cathepsin B; Belongs to the peptidase C1 family.	0.621
Ctsk	I79_001476	G3H2X4	G3GUV2	Cathepsin K.	Collagenase 3.	0.582
Ctsk	Mmp9	G3H2X4	G3H8V1	Cathepsin K.	Matrix metalloproteinase-9.	0.593
I79_001476	Ctsk	G3GUV2	G3H2X4	Collagenase 3.	Cathepsin K.	0.582
I79_001476	I79_001479	G3GUV2	G3GUV5	Collagenase 3.	Matrix metalloproteinase-20.	0.456
I79_001476	I79_004580	G3GUV2	G3H2X5	Collagenase 3.	Cathepsin K.	0.582
I79_001476	I79_013395	G3GUV2	G3HRD0	Collagenase 3.	Matrix metalloproteinase-14.	0.725
I79_001476	I79_014551	G3GUV2	G3HUE2	Collagenase 3.	Matrix metalloproteinase-16.	0.711
I79_001476	Mmp10	G3GUV2	G3GUV4	Collagenase 3.	Stromelysin-2.	0.562
I79_001476	Mmp11	G3GUV2	G3HY12	Collagenase 3.	Stromelysin-3.	0.618
I79_001476	Mmp12	G3GUV2	G3GUV3	Collagenase 3.	Macrophage metalloelastase.	0.498
I79_001476	Mmp15	G3GUV2	G3I2X0	Collagenase 3.	Matrix metalloproteinase-15.	0.468
I79_001476	Mmp17	G3GUV2	G3I2M6	Collagenase 3.	Matrix metalloproteinase-17.	0.506
I79_001476	Mmp2	G3GUV2	G3H0R8	Collagenase 3.	72 kDa type IV collagenase.	0.439