(13 nodes) U1 snRNA binding network (Cricetulus griseus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	I79_025821	Pre-mRNA-processing-splicing factor 8. (264 aa)
	I79_025881	Pre-mRNA-processing-splicing factor 8. (318 aa)
	I79_025983	Pre-mRNA-processing-splicing factor 8. (197 aa)
	I79_026056	Pre-mRNA-processing-splicing factor 8. (184 aa)
	Snrpb2	U2 small nuclear ribonucleoprotein B. (180 aa)
	Isg20	Interferon-stimulated gene 20 kDa protein. (174 aa)
	Snrnp70	U1 small nuclear ribonucleoprotein 70 kDa. (445 aa)
	I79_009465	Gem-associated protein 5. (1001 aa)
	I79_022290	U2 small nuclear ribonucleoprotein B. (113 aa)
	I79_012406	U1 small nuclear ribonucleoprotein A. (291 aa)
	I79_024174	U1 small nuclear ribonucleoprotein A. (104 aa)
	I79_024092	Pre-mRNA-processing-splicing factor 8. (189 aa)
	Prpf8	Pre-mRNA-processing-splicing factor 8. (365 aa)

Your Current Organism:

Cricetulus griseus

NCBI taxonomy Id: 10029
Other names: C. griseus, CHO cell lines, Chinese hamster, Chinese hamsters, Cricetulus aureus, Cricetulus barabensis griseus

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
I79_009465	Snrnp70	G3HFU8	G3HZY5	Gem-associated protein 5.	U1 small nuclear ribonucleoprotein 70 kDa.	0.401
I79_012406	I79_022290	G3HNR3	G3IEY4	U1 small nuclear ribonucleoprotein A.	U2 small nuclear ribonucleoprotein B.	0.449
I79_012406	I79_024092	G3HNR3	G3IJQ6	U1 small nuclear ribonucleoprotein A.	Pre-mRNA-processing-splicing factor 8.	0.491
I79_012406	I79_025821	G3HNR3	G3IPB5	U1 small nuclear ribonucleoprotein A.	Pre-mRNA-processing-splicing factor 8.	0.491
I79_012406	I79_025881	G3HNR3	G3IPH0	U1 small nuclear ribonucleoprotein A.	Pre-mRNA-processing-splicing factor 8.	0.491
I79_012406	I79_025983	G3HNR3	G3IPR4	U1 small nuclear ribonucleoprotein A.	Pre-mRNA-processing-splicing factor 8.	0.491
I79_012406	I79_026056	G3HNR3	G3IPX1	U1 small nuclear ribonucleoprotein A.	Pre-mRNA-processing-splicing factor 8.	0.491
I79_012406	Prpf8	G3HNR3	G3IJQ5	U1 small nuclear ribonucleoprotein A.	Pre-mRNA-processing-splicing factor 8.	0.491
I79_012406	Snrnp70	G3HNR3	G3HZY5	U1 small nuclear ribonucleoprotein A.	U1 small nuclear ribonucleoprotein 70 kDa.	0.943
I79_012406	Snrpb2	G3HNR3	G3HY27	U1 small nuclear ribonucleoprotein A.	U2 small nuclear ribonucleoprotein B.	0.450
I79_022290	I79_012406	G3IEY4	G3HNR3	U2 small nuclear ribonucleoprotein B.	U1 small nuclear ribonucleoprotein A.	0.449
I79_022290	I79_024092	G3IEY4	G3IJQ6	U2 small nuclear ribonucleoprotein B.	Pre-mRNA-processing-splicing factor 8.	0.484
I79_022290	I79_024174	G3IEY4	G3IJY3	U2 small nuclear ribonucleoprotein B.	U1 small nuclear ribonucleoprotein A.	0.455
I79_022290	I79_025821	G3IEY4	G3IPB5	U2 small nuclear ribonucleoprotein B.	Pre-mRNA-processing-splicing factor 8.	0.484
I79_022290	I79_025881	G3IEY4	G3IPH0	U2 small nuclear ribonucleoprotein B.	Pre-mRNA-processing-splicing factor 8.	0.484
I79_022290	I79_025983	G3IEY4	G3IPR4	U2 small nuclear ribonucleoprotein B.	Pre-mRNA-processing-splicing factor 8.	0.484
I79_022290	I79_026056	G3IEY4	G3IPX1	U2 small nuclear ribonucleoprotein B.	Pre-mRNA-processing-splicing factor 8.	0.484
I79_022290	Prpf8	G3IEY4	G3IJQ5	U2 small nuclear ribonucleoprotein B.	Pre-mRNA-processing-splicing factor 8.	0.484
I79_022290	Snrnp70	G3IEY4	G3HZY5	U2 small nuclear ribonucleoprotein B.	U1 small nuclear ribonucleoprotein 70 kDa.	0.874
I79_024092	I79_012406	G3IJQ6	G3HNR3	Pre-mRNA-processing-splicing factor 8.	U1 small nuclear ribonucleoprotein A.	0.491