(13 nodes) Chromatoid body network (Cricetulus griseus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	I79_008099	tRNA (Cytosine-5-)-methyltransferase NSUN2; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (515 aa)
	H671_5g13635	Protein maelstrom-like. (172 aa)
	I79_009358	ATP-dependent RNA helicase DDX25. (441 aa)
	Tdrd6	Tudor domain-containing protein 6; Belongs to the mitochondrial carrier (TC 2.A.29) family. (2117 aa)
	Ddx6	Putative ATP-dependent RNA helicase DDX6-like protein; Belongs to the DEAD box helicase family. (483 aa)
	I79_020539	Eukaryotic translation initiation factor 4E; Belongs to the eukaryotic initiation factor 4E family. (117 aa)
	I79_021373	Calcium-binding mitochondrial carrier protein SCaMC-1; Belongs to the mitochondrial carrier (TC 2.A.29) family. (415 aa)
	Piwil1	Piwi-like protein 1; Belongs to the argonaute family. (781 aa)
	I79_023160	Piwi-like protein 1. (310 aa)
	Eif4e	Eukaryotic translation initiation factor 4E; Belongs to the eukaryotic initiation factor 4E family. (117 aa)
	Smg1	Serine/threonine-protein kinase SMG1. (1704 aa)
	I79_024960	Piwi-like protein 1. (187 aa)
	I79_006327	Tudor domain-containing protein 5. (852 aa)

Your Current Organism:

Cricetulus griseus

NCBI taxonomy Id: 10029
Other names: C. griseus, CHO cell lines, Chinese hamster, Chinese hamsters, Cricetulus aureus, Cricetulus barabensis griseus

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Ddx6	Eif4e	G3I5T3	G3IIH3	Putative ATP-dependent RNA helicase DDX6-like protein; Belongs to the DEAD box helicase family.	Eukaryotic translation initiation factor 4E; Belongs to the eukaryotic initiation factor 4E family.	0.714
Ddx6	I79_020539	G3I5T3	G3IAB9	Putative ATP-dependent RNA helicase DDX6-like protein; Belongs to the DEAD box helicase family.	Eukaryotic translation initiation factor 4E; Belongs to the eukaryotic initiation factor 4E family.	0.657
Ddx6	Smg1	G3I5T3	G3IKE4	Putative ATP-dependent RNA helicase DDX6-like protein; Belongs to the DEAD box helicase family.	Serine/threonine-protein kinase SMG1.	0.410
Ddx6	Tdrd6	G3I5T3	G3I3R4	Putative ATP-dependent RNA helicase DDX6-like protein; Belongs to the DEAD box helicase family.	Tudor domain-containing protein 6; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.536
Eif4e	Ddx6	G3IIH3	G3I5T3	Eukaryotic translation initiation factor 4E; Belongs to the eukaryotic initiation factor 4E family.	Putative ATP-dependent RNA helicase DDX6-like protein; Belongs to the DEAD box helicase family.	0.714
Eif4e	Smg1	G3IIH3	G3IKE4	Eukaryotic translation initiation factor 4E; Belongs to the eukaryotic initiation factor 4E family.	Serine/threonine-protein kinase SMG1.	0.521
H671_5g13635	I79_006327	G3HE74	G3H7J5	Protein maelstrom-like.	Tudor domain-containing protein 5.	0.402
H671_5g13635	I79_023160	G3HE74	G3IH76	Protein maelstrom-like.	Piwi-like protein 1.	0.466
H671_5g13635	I79_024960	G3HE74	G3IM30	Protein maelstrom-like.	Piwi-like protein 1.	0.466
H671_5g13635	Piwil1	G3HE74	G3ICR8	Protein maelstrom-like.	Piwi-like protein 1; Belongs to the argonaute family.	0.466
H671_5g13635	Tdrd6	G3HE74	G3I3R4	Protein maelstrom-like.	Tudor domain-containing protein 6; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.452
I79_006327	H671_5g13635	G3H7J5	G3HE74	Tudor domain-containing protein 5.	Protein maelstrom-like.	0.402
I79_006327	I79_023160	G3H7J5	G3IH76	Tudor domain-containing protein 5.	Piwi-like protein 1.	0.643
I79_006327	I79_024960	G3H7J5	G3IM30	Tudor domain-containing protein 5.	Piwi-like protein 1.	0.643
I79_006327	Piwil1	G3H7J5	G3ICR8	Tudor domain-containing protein 5.	Piwi-like protein 1; Belongs to the argonaute family.	0.643
I79_009358	Tdrd6	G3HFJ9	G3I3R4	ATP-dependent RNA helicase DDX25.	Tudor domain-containing protein 6; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.479
I79_020539	Ddx6	G3IAB9	G3I5T3	Eukaryotic translation initiation factor 4E; Belongs to the eukaryotic initiation factor 4E family.	Putative ATP-dependent RNA helicase DDX6-like protein; Belongs to the DEAD box helicase family.	0.657
I79_020539	Smg1	G3IAB9	G3IKE4	Eukaryotic translation initiation factor 4E; Belongs to the eukaryotic initiation factor 4E family.	Serine/threonine-protein kinase SMG1.	0.521
I79_023160	H671_5g13635	G3IH76	G3HE74	Piwi-like protein 1.	Protein maelstrom-like.	0.466
I79_023160	I79_006327	G3IH76	G3H7J5	Piwi-like protein 1.	Tudor domain-containing protein 5.	0.643