(12 nodes) P-body assembly network (Cricetulus griseus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Eif4enif1	Eukaryotic translation initiation factor 4E transporter. (984 aa)
	Noct	Nocturnin. (365 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (124 aa)
	Dync1h1	Cytoplasmic dynein 1 heavy chain 1. (4592 aa)
	I79_004263	Ataxin-2. (904 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (103 aa)
	Serpinc1	Roquin; Belongs to the serpin family. (1418 aa)
	Ddx6	Putative ATP-dependent RNA helicase DDX6-like protein; Belongs to the DEAD box helicase family. (483 aa)
	Cnot7	CCR4-NOT transcription complex subunit 7-like isoform 1. (285 aa)
	Patl1	Protein PAT1-like 1. (695 aa)
	Limd1	LIM domain-containing protein 1. (667 aa)
	Edc3	Enhancer of mRNA-decapping protein 3. (508 aa)

Your Current Organism:

Cricetulus griseus

NCBI taxonomy Id: 10029
Other names: C. griseus, CHO cell lines, Chinese hamster, Chinese hamsters, Cricetulus aureus, Cricetulus barabensis griseus

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Cnot7	Ddx6	G3GZC4	G3I5T3	CCR4-NOT transcription complex subunit 7-like isoform 1.	Putative ATP-dependent RNA helicase DDX6-like protein; Belongs to the DEAD box helicase family.	0.923
Cnot7	Edc3	G3GZC4	G3HEH3	CCR4-NOT transcription complex subunit 7-like isoform 1.	Enhancer of mRNA-decapping protein 3.	0.418
Cnot7	Noct	G3GZC4	G3HAS5	CCR4-NOT transcription complex subunit 7-like isoform 1.	Nocturnin.	0.768
Cnot7	Patl1	G3GZC4	G3ILU5	CCR4-NOT transcription complex subunit 7-like isoform 1.	Protein PAT1-like 1.	0.938
Cnot7	Serpinc1	G3GZC4	G3GZL3	CCR4-NOT transcription complex subunit 7-like isoform 1.	Roquin; Belongs to the serpin family.	0.583
Ddx6	Cnot7	G3I5T3	G3GZC4	Putative ATP-dependent RNA helicase DDX6-like protein; Belongs to the DEAD box helicase family.	CCR4-NOT transcription complex subunit 7-like isoform 1.	0.923
Ddx6	Edc3	G3I5T3	G3HEH3	Putative ATP-dependent RNA helicase DDX6-like protein; Belongs to the DEAD box helicase family.	Enhancer of mRNA-decapping protein 3.	0.998
Ddx6	Eif4enif1	G3I5T3	G3I1Z5	Putative ATP-dependent RNA helicase DDX6-like protein; Belongs to the DEAD box helicase family.	Eukaryotic translation initiation factor 4E transporter.	0.965
Ddx6	I79_004263	G3I5T3	G3H292	Putative ATP-dependent RNA helicase DDX6-like protein; Belongs to the DEAD box helicase family.	Ataxin-2.	0.944
Ddx6	LSM3	G3I5T3	G3GS16	Putative ATP-dependent RNA helicase DDX6-like protein; Belongs to the DEAD box helicase family.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.875
Ddx6	LSM4	G3I5T3	G3H4A5	Putative ATP-dependent RNA helicase DDX6-like protein; Belongs to the DEAD box helicase family.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.952
Ddx6	Limd1	G3I5T3	G3HWS7	Putative ATP-dependent RNA helicase DDX6-like protein; Belongs to the DEAD box helicase family.	LIM domain-containing protein 1.	0.427
Ddx6	Noct	G3I5T3	G3HAS5	Putative ATP-dependent RNA helicase DDX6-like protein; Belongs to the DEAD box helicase family.	Nocturnin.	0.822
Ddx6	Patl1	G3I5T3	G3ILU5	Putative ATP-dependent RNA helicase DDX6-like protein; Belongs to the DEAD box helicase family.	Protein PAT1-like 1.	0.996
Ddx6	Serpinc1	G3I5T3	G3GZL3	Putative ATP-dependent RNA helicase DDX6-like protein; Belongs to the DEAD box helicase family.	Roquin; Belongs to the serpin family.	0.700
Edc3	Cnot7	G3HEH3	G3GZC4	Enhancer of mRNA-decapping protein 3.	CCR4-NOT transcription complex subunit 7-like isoform 1.	0.418
Edc3	Ddx6	G3HEH3	G3I5T3	Enhancer of mRNA-decapping protein 3.	Putative ATP-dependent RNA helicase DDX6-like protein; Belongs to the DEAD box helicase family.	0.998
Edc3	Eif4enif1	G3HEH3	G3I1Z5	Enhancer of mRNA-decapping protein 3.	Eukaryotic translation initiation factor 4E transporter.	0.502
Edc3	I79_004263	G3HEH3	G3H292	Enhancer of mRNA-decapping protein 3.	Ataxin-2.	0.488
Edc3	LSM3	G3HEH3	G3GS16	Enhancer of mRNA-decapping protein 3.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.854