STRINGSTRING
I79_001781 I79_001781 I79_001883 I79_001883 I79_002890 I79_002890 Eri1 Eri1 LSM1 LSM1 Hnrnpa2b1 Hnrnpa2b1 I79_004933 I79_004933 Hnrnpa1 Hnrnpa1 I79_022422 I79_022422 Zrsr2 Zrsr2 Per2 Per2 I79_020059 I79_020059 I79_018302 I79_018302 CgPICR_009543 CgPICR_009543 Ep300 Ep300 Tardbp Tardbp I79_026056 I79_026056 I79_025983 I79_025983 I79_025881 I79_025881 I79_025821 I79_025821 I79_024092 I79_024092 Prpf8 Prpf8 I79_023431 I79_023431 I79_018871 I79_018871 Sf1 Sf1 I79_019198 I79_019198 Hnrnpu Hnrnpu I79_006472 I79_006472 I79_006752 I79_006752 Ddx5 Ddx5 Srsf6 Srsf6 I79_008647 I79_008647 Slu7 Slu7 Ptbp1 Ptbp1 I79_011099 I79_011099 Tra2b Tra2b I79_012459 I79_012459 H671_xg20125 H671_xg20125 I79_012765 I79_012765 I79_019199 I79_019199 CgPICR_014162 CgPICR_014162 I79_013671 I79_013671 CgPICR_006774 CgPICR_006774 Rbm41 Rbm41 I79_015608 I79_015608 U2af2 U2af2 I79_017119 I79_017119 Rbm7 Rbm7 I79_000973 I79_000973 H671_3g9885 H671_3g9885
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
I79_001781CUG-BP-and ETR-3-like factor 2. (508 aa)
I79_001883ELAV-like protein; Belongs to the RRM elav family. (350 aa)
I79_002890CUG-BP-and ETR-3-like factor 1. (514 aa)
Eri13'-5' exoribonuclease 1. (279 aa)
LSM1U6 snRNA-associated Sm-like protein LSm1; Plays a role in the degradation of histone mRNAs, the only eukaryotic mRNAs that are not polyadenylated. Probably also part of an LSm subunits-containing complex involved in the general process of mRNA degradation. (133 aa)
Hnrnpa2b1Heterogeneous nuclear ribonucleoproteins A2/B1. (282 aa)
I79_004933Histone RNA hairpin-binding protein. (101 aa)
Hnrnpa1Putative heterogeneous nuclear ribonucleoprotein A1-like protein 3. (340 aa)
I79_022422Heterogeneous nuclear ribonucleoprotein A1. (166 aa)
Zrsr2U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2. (138 aa)
Per2Period circadian protein-like 2. (1262 aa)
I79_020059U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1. (181 aa)
I79_018302Pre-mRNA-splicing factor SLU7. (100 aa)
CgPICR_009543RNA-binding protein 4. (360 aa)
Ep300Histone acetyltransferase p300. (2415 aa)
TardbpTAR DNA-binding protein 43. (199 aa)
I79_026056Pre-mRNA-processing-splicing factor 8. (184 aa)
I79_025983Pre-mRNA-processing-splicing factor 8. (197 aa)
I79_025881Pre-mRNA-processing-splicing factor 8. (318 aa)
I79_025821Pre-mRNA-processing-splicing factor 8. (264 aa)
I79_024092Pre-mRNA-processing-splicing factor 8. (189 aa)
Prpf8Pre-mRNA-processing-splicing factor 8. (365 aa)
I79_023431Polypyrimidine tract-binding protein 1. (323 aa)
I79_018871TAR DNA-binding protein 43. (213 aa)
Sf1Splicing factor 1. (522 aa)
I79_019198Putative RNA-binding protein 20. (756 aa)
HnrnpuHeterogeneous nuclear ribonucleoprotein U. (512 aa)
I79_006472Polypyrimidine tract-binding protein 1. (119 aa)
I79_006752Heterogeneous nuclear ribonucleoprotein A1. (98 aa)
Ddx5Putative ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family. (615 aa)
Srsf6Splicing factor, arginine/serine-rich 6. (210 aa)
I79_008647U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1. (427 aa)
Slu7Pre-mRNA-splicing factor SLU7. (564 aa)
Ptbp1Polypyrimidine tract-binding protein 1. (528 aa)
I79_011099Histone RNA hairpin-binding protein. (225 aa)
Tra2bTransformer-2 protein-like beta. (288 aa)
I79_012459Splicing factor U2AF 35 kDa subunit. (98 aa)
H671_xg20125Heterogeneous nuclear ribonucleoprotein A1-like protein 2. (151 aa)
I79_012765U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (469 aa)
I79_019199Putative RNA-binding protein 20. (349 aa)
CgPICR_014162Polypyrimidine tract-binding protein 1. (575 aa)
I79_013671Pre-mRNA-splicing factor RBM22. (241 aa)
CgPICR_006774Pre-mRNA-splicing factor SLU7. (100 aa)
Rbm41RNA-binding protein 41. (385 aa)
I79_015608RNA-binding protein 7. (157 aa)
U2af2U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (422 aa)
I79_017119CUG-BP-and ETR-3-like factor 4. (135 aa)
Rbm7RNA-binding protein 7. (265 aa)
I79_000973Transcription factor SOX-10. (360 aa)
H671_3g9885RNA-binding protein 24. (251 aa)
Your Current Organism:
Cricetulus griseus
NCBI taxonomy Id: 10029
Other names: C. griseus, CHO cell lines, Chinese hamster, Chinese hamsters, Cricetulus aureus, Cricetulus barabensis griseus
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