33 items (Cricetulus griseus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	I79_000303	Glutaredoxin domain-containing protein; Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family. (385 aa)
	Krit1	Krev interaction trapped protein 1. (740 aa)
	Prdx1	Peroxiredoxin-1. (199 aa)
	Nfe2l2	Nuclear factor erythroid 2-related factor 2. (588 aa)
	Bola1	BolA-like protein 1; Belongs to the BolA/IbaG family. (125 aa)
	Nfe2l1	Nuclear factor erythroid 2-related factor 1. (740 aa)
	Gsr	Glutathione reductase, mitochondrial. (410 aa)
	Prdx3	Thioredoxin-dependent peroxide reductase, mitochondrial. (257 aa)
	Gpx1	Glutathione peroxidase; Belongs to the glutathione peroxidase family. (145 aa)
	H671_1g1921	Dihydrolipoyl dehydrogenase, mitochondrial. (180 aa)
	Slc2a10	Solute carrier family 2, facilitated glucose transporter member 10; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family. (423 aa)
	Prdx2	Peroxiredoxin-2. (198 aa)
	Txnrd2	Thioredoxin reductase 2, mitochondrial. (276 aa)
	I79_009034	Thioredoxin reductase 2, mitochondrial. (116 aa)
	I79_009560	Selenoprotein T; Belongs to the SelWTH family. Selenoprotein T subfamily. (58 aa)
	Selenot	Selenoprotein T; Belongs to the SelWTH family. Selenoprotein T subfamily. (137 aa)
	Gclc	Glutamate--cysteine ligase catalytic subunit. (584 aa)
	Nnt	NAD(P) transhydrogenase, mitochondrial. (336 aa)
	I79_013121	Thioredoxin reductase 1, cytoplasmic; Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family. (565 aa)
	Git1	ARF GTPase-activating protein GIT1. (809 aa)
	CgPICR_001850	Selenoprotein H. (100 aa)
	I79_015109	Interleukin-6. (174 aa)
	Ddit3	DNA damage-inducible transcript 3. (167 aa)
	Ero1b	ERO1-like protein beta. (454 aa)
	Nqo1	NAD(P)H dehydrogenase [quinone] 1. (274 aa)
	Dld	Dihydrolipoyl dehydrogenase. (509 aa)
	Bola3	BolA-like protein 3; Belongs to the BolA/IbaG family. (110 aa)
	I79_022036	Peroxiredoxin-2. (108 aa)
	I79_024482	Glutaredoxin-3. (332 aa)
	I79_024624	NAD(P) transhydrogenase, mitochondrial. (207 aa)
	I79_025589	NAD(P) transhydrogenase, mitochondrial. (207 aa)
	APE	DNA-(apurinic or apyrimidinic site) lyase; Initiates repair of AP sites in DNA by catalyzing hydrolytic incision of the phosphodiester backbone immediately adjacent to the damage, generating a single-strand break with 5'-deoxyribose phosphate and 3'-hydroxyl ends. (317 aa)
	Txn2	Thioredoxin, mitochondrial. (64 aa)

Your Current Organism:

Cricetulus griseus

NCBI taxonomy Id: 10029
Other names: C. griseus, CHO cell lines, Chinese hamster, Chinese hamsters, Cricetulus aureus, Cricetulus barabensis griseus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Bola1	Bola3	G3H2U4	G3I4A5	BolA-like protein 1; Belongs to the BolA/IbaG family.	BolA-like protein 3; Belongs to the BolA/IbaG family.	0.980
Bola1	I79_024482	G3H2U4	G3IKS9	BolA-like protein 1; Belongs to the BolA/IbaG family.	Glutaredoxin-3.	0.950
Bola3	Bola1	G3I4A5	G3H2U4	BolA-like protein 3; Belongs to the BolA/IbaG family.	BolA-like protein 1; Belongs to the BolA/IbaG family.	0.980
Bola3	I79_024482	G3I4A5	G3IKS9	BolA-like protein 3; Belongs to the BolA/IbaG family.	Glutaredoxin-3.	0.930
CgPICR_001850	I79_000303	G3HRH2	G3GRZ6	Selenoprotein H.	Glutaredoxin domain-containing protein; Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.	0.415
CgPICR_001850	I79_009560	G3HRH2	G3HG41	Selenoprotein H.	Selenoprotein T; Belongs to the SelWTH family. Selenoprotein T subfamily.	0.761
CgPICR_001850	Selenot	G3HRH2	G3HG42	Selenoprotein H.	Selenoprotein T; Belongs to the SelWTH family. Selenoprotein T subfamily.	0.695
CgPICR_001850	Txnrd2	G3HRH2	G3HEP5	Selenoprotein H.	Thioredoxin reductase 2, mitochondrial.	0.663
Ddit3	Nfe2l2	G3HW45	G3H1T9	DNA damage-inducible transcript 3.	Nuclear factor erythroid 2-related factor 2.	0.926
Dld	H671_1g1921	G3I277	G3H8L2	Dihydrolipoyl dehydrogenase.	Dihydrolipoyl dehydrogenase, mitochondrial.	0.900
Dld	Prdx3	G3I277	G3H7R4	Dihydrolipoyl dehydrogenase.	Thioredoxin-dependent peroxide reductase, mitochondrial.	0.431
Dld	Txn2	G3I277	G3IMT0	Dihydrolipoyl dehydrogenase.	Thioredoxin, mitochondrial.	0.429
Ero1b	Gpx1	G3HWE1	G3H8G0	ERO1-like protein beta.	Glutathione peroxidase; Belongs to the glutathione peroxidase family.	0.493
Ero1b	Txn2	G3HWE1	G3IMT0	ERO1-like protein beta.	Thioredoxin, mitochondrial.	0.570
Gclc	Gpx1	G3HIY9	G3H8G0	Glutamate--cysteine ligase catalytic subunit.	Glutathione peroxidase; Belongs to the glutathione peroxidase family.	0.586
Gclc	Gsr	G3HIY9	G3H609	Glutamate--cysteine ligase catalytic subunit.	Glutathione reductase, mitochondrial.	0.826
Gclc	I79_013121	G3HIY9	G3HQL6	Glutamate--cysteine ligase catalytic subunit.	Thioredoxin reductase 1, cytoplasmic; Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.	0.422
Gclc	Nfe2l1	G3HIY9	G3H5T8	Glutamate--cysteine ligase catalytic subunit.	Nuclear factor erythroid 2-related factor 1.	0.456
Gclc	Nfe2l2	G3HIY9	G3H1T9	Glutamate--cysteine ligase catalytic subunit.	Nuclear factor erythroid 2-related factor 2.	0.681
Gclc	Nqo1	G3HIY9	G3I015	Glutamate--cysteine ligase catalytic subunit.	NAD(P)H dehydrogenase [quinone] 1.	0.771