STRINGSTRING
Vhl Vhl Jag1 Jag1 Tgfbr1 Tgfbr1 Id1 Id1 S1pr3 S1pr3 Zeb1 Zeb1 Gpsm3 Gpsm3 Xdh Xdh Foxj2 Foxj2 Acvrl1 Acvrl1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
VhlVon Hippel-Lindau disease tumor suppressor. (134 aa)
Jag1Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling. (1186 aa)
Tgfbr1Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. (401 aa)
Id1DNA-binding protein inhibitor ID-1. (157 aa)
S1pr3Sphingosine 1-phosphate receptor 3; Belongs to the G-protein coupled receptor 1 family. (376 aa)
Zeb1Zinc finger E-box-binding homeobox 1. (1078 aa)
Gpsm3Neurogenic locus notch-like protein 4. (1797 aa)
XdhXanthine dehydrogenase/oxidase. (1332 aa)
Foxj2Forkhead box protein J2. (573 aa)
Acvrl1Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily. (776 aa)
Your Current Organism:
Cricetulus griseus
NCBI taxonomy Id: 10029
Other names: C. griseus, CHO cell lines, Chinese hamster, Chinese hamsters, Cricetulus aureus, Cricetulus barabensis griseus
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