(32 nodes) Mesodermal cell differentiation network (Cricetulus griseus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Taf10	Transcription initiation factor TFIID subunit 10. (125 aa)
	I79_021155	Paired box protein Pax-2. (503 aa)
	I79_018432	Homeobox protein NANOG. (490 aa)
	Tbx6	T-box transcription factor TBX6-like isoform 1. (436 aa)
	Itgb1	Integrin beta; Belongs to the integrin beta chain family. (798 aa)
	Inhba	Inhibin beta A chain-like protein. (424 aa)
	Itgb4	Integrin beta-4. (650 aa)
	I79_014326	Integrin beta-4. (157 aa)
	Pou5f1	POU domain protein. (358 aa)
	I79_014325	Integrin beta-4. (117 aa)
	I79_012727	Eyes absent homolog; Belongs to the HAD-like hydrolase superfamily. EYA family. (441 aa)
	Itga3	Integrin alpha-3; Belongs to the integrin alpha chain family. (1051 aa)
	I79_010136	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (230 aa)
	Itgb3	Integrin beta; Belongs to the integrin beta chain family. (975 aa)
	Hoxa11	Homeobox protein Hox-A11. (250 aa)
	I79_007326	POU domain, class 5, transcription factor 1. (221 aa)
	Smad1	Mothers against decapentaplegic-like 1. (232 aa)
	I79_006254	Bone morphogenetic protein 4. (406 aa)
	Nodal	Nodal. (309 aa)
	I79_006022	Histone demethylase UTY. (1080 aa)
	I79_005573	Secreted frizzled-related protein 2. (268 aa)
	Tal1	T-cell acute lymphocytic leukemia protein 1-like. (329 aa)
	I79_002659	High mobility group protein HMGI-C. (103 aa)
	Six2	Homeobox protein SIX2. (299 aa)
	Foxf1	Forkhead box protein F1. (320 aa)
	I79_025783	Mothers against decapentaplegic-like 1. (97 aa)
	I79_025513	Mothers against decapentaplegic-like 1. (151 aa)
	I79_025459	Mothers against decapentaplegic-like 1. (117 aa)
	I79_025316	Mothers against decapentaplegic-like 1. (104 aa)
	I79_024959	Mothers against decapentaplegic-like 1. (161 aa)
	Fgfr2	Fibroblast growth factor receptor 2. (659 aa)
	I79_021938	Mothers against decapentaplegic-like 1. (122 aa)

Your Current Organism:

Cricetulus griseus

NCBI taxonomy Id: 10029
Other names: C. griseus, CHO cell lines, Chinese hamster, Chinese hamsters, Cricetulus aureus, Cricetulus barabensis griseus

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Foxf1	I79_006254	G3GRV9	G3H7C4	Forkhead box protein F1.	Bone morphogenetic protein 4.	0.571
Foxf1	Pou5f1	G3GRV9	G3HQN4	Forkhead box protein F1.	POU domain protein.	0.420
Foxf1	Tbx6	G3GRV9	G3I4H4	Forkhead box protein F1.	T-box transcription factor TBX6-like isoform 1.	0.567
Hoxa11	I79_021155	G3HD82	G3IBX2	Homeobox protein Hox-A11.	Paired box protein Pax-2.	0.411
I79_005573	I79_010136	G3H5J1	G3HHN2	Secreted frizzled-related protein 2.	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.	0.621
I79_006254	Foxf1	G3H7C4	G3GRV9	Bone morphogenetic protein 4.	Forkhead box protein F1.	0.571
I79_006254	I79_010136	G3H7C4	G3HHN2	Bone morphogenetic protein 4.	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.	0.410
I79_006254	I79_018432	G3H7C4	G3I4P9	Bone morphogenetic protein 4.	Homeobox protein NANOG.	0.569
I79_006254	I79_021938	G3H7C4	G3IDZ7	Bone morphogenetic protein 4.	Mothers against decapentaplegic-like 1.	0.522
I79_006254	I79_024959	G3H7C4	G3IM29	Bone morphogenetic protein 4.	Mothers against decapentaplegic-like 1.	0.522
I79_006254	I79_025316	G3H7C4	G3IN07	Bone morphogenetic protein 4.	Mothers against decapentaplegic-like 1.	0.522
I79_006254	I79_025459	G3H7C4	G3INE2	Bone morphogenetic protein 4.	Mothers against decapentaplegic-like 1.	0.522
I79_006254	I79_025513	G3H7C4	G3INI8	Bone morphogenetic protein 4.	Mothers against decapentaplegic-like 1.	0.522
I79_006254	I79_025783	G3H7C4	G3IP79	Bone morphogenetic protein 4.	Mothers against decapentaplegic-like 1.	0.522
I79_006254	Inhba	G3H7C4	G3HVA1	Bone morphogenetic protein 4.	Inhibin beta A chain-like protein.	0.511
I79_006254	Smad1	G3H7C4	G3H9G8	Bone morphogenetic protein 4.	Mothers against decapentaplegic-like 1.	0.522
I79_006254	Tbx6	G3H7C4	G3I4H4	Bone morphogenetic protein 4.	T-box transcription factor TBX6-like isoform 1.	0.493
I79_007326	I79_018432	G3HA81	G3I4P9	POU domain, class 5, transcription factor 1.	Homeobox protein NANOG.	0.867
I79_010136	I79_005573	G3HHN2	G3H5J1	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.	Secreted frizzled-related protein 2.	0.621
I79_010136	I79_006254	G3HHN2	G3H7C4	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.	Bone morphogenetic protein 4.	0.410