(10 nodes) Semicircular canal morphogenesis network (Cricetulus griseus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Zeb1	Zinc finger E-box-binding homeobox 1. (1078 aa)
	I79_009030	T-box transcription factor TBX1. (293 aa)
	Hoxa1	Homeobox protein Hox-A1. (334 aa)
	Tbx3	T-box transcription factor TBX3. (709 aa)
	Fgf3	Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (171 aa)
	I79_013437	Nuclear receptor subfamily 4 group A member 3. (598 aa)
	Chd7	Chromodomain-helicase-DNA-binding protein 7. (615 aa)
	I79_012815	Chromodomain-helicase-DNA-binding protein 7. (150 aa)
	I79_012814	Chromodomain-helicase-DNA-binding protein 7. (100 aa)
	I79_012727	Eyes absent homolog; Belongs to the HAD-like hydrolase superfamily. EYA family. (441 aa)

Your Current Organism:

Cricetulus griseus

NCBI taxonomy Id: 10029
Other names: C. griseus, CHO cell lines, Chinese hamster, Chinese hamsters, Cricetulus aureus, Cricetulus barabensis griseus

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Chd7	I79_012814	G3HPU6	G3HPU4	Chromodomain-helicase-DNA-binding protein 7.	Chromodomain-helicase-DNA-binding protein 7.	0.886
Chd7	I79_012815	G3HPU6	G3HPU5	Chromodomain-helicase-DNA-binding protein 7.	Chromodomain-helicase-DNA-binding protein 7.	0.845
I79_012814	Chd7	G3HPU4	G3HPU6	Chromodomain-helicase-DNA-binding protein 7.	Chromodomain-helicase-DNA-binding protein 7.	0.886
I79_012814	I79_012815	G3HPU4	G3HPU5	Chromodomain-helicase-DNA-binding protein 7.	Chromodomain-helicase-DNA-binding protein 7.	0.866
I79_012815	Chd7	G3HPU5	G3HPU6	Chromodomain-helicase-DNA-binding protein 7.	Chromodomain-helicase-DNA-binding protein 7.	0.845
I79_012815	I79_012814	G3HPU5	G3HPU4	Chromodomain-helicase-DNA-binding protein 7.	Chromodomain-helicase-DNA-binding protein 7.	0.866