(19 nodes) Retinal rod cell differentiation network (Cricetulus griseus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	I79_000973	Transcription factor SOX-10. (360 aa)
	Cntf	Ciliary neurotrophic factor. (59 aa)
	Rorb	Nuclear receptor ROR-beta. (440 aa)
	I79_019797	BDNF/NT-3 growth factors receptor. (192 aa)
	Ntrk2	Tyrosine-protein kinase receptor. (383 aa)
	Casz1	Zinc finger protein castor-like 1. (1520 aa)
	I79_016044	Alstrom syndrome protein 1-like. (276 aa)
	Alms1	Alstrom syndrome protein 1-like. (327 aa)
	I79_015426	X-linked retinitis pigmentosa GTPase regulator-interacting protein 1. (1122 aa)
	I79_013982	Oxygen-regulated protein 1. (657 aa)
	Trpm1	Transient receptor potential cation channel subfamily M member 1. (1574 aa)
	Naglu	Alpha-N-acetylglucosaminidase. (740 aa)
	Bbs4	Bardet-Biedl syndrome 4 protein-like. (125 aa)
	I79_008980	Bardet-Biedl syndrome 4 protein-like. (104 aa)
	Nrl	Neural retina-specific leucine zipper protein. (136 aa)
	Sox8	Transcription factor SOX-8. (463 aa)
	Ptn	Pleiotrophin. (168 aa)
	Rpgrip1l	Protein fantom. (1265 aa)
	Ahi1	Jouberin. (988 aa)

Your Current Organism:

Cricetulus griseus

NCBI taxonomy Id: 10029
Other names: C. griseus, CHO cell lines, Chinese hamster, Chinese hamsters, Cricetulus aureus, Cricetulus barabensis griseus

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Ahi1	I79_015426	G3GW72	G3HWP8	Jouberin.	X-linked retinitis pigmentosa GTPase regulator-interacting protein 1.	0.439
Ahi1	Rpgrip1l	G3GW72	G3H0R2	Jouberin.	Protein fantom.	0.801
Alms1	I79_016044	G3HYB8	G3HYB9	Alstrom syndrome protein 1-like.	Alstrom syndrome protein 1-like.	0.925
Bbs4	I79_008980	G3HEJ7	G3HEJ6	Bardet-Biedl syndrome 4 protein-like.	Bardet-Biedl syndrome 4 protein-like.	0.450
I79_008980	Bbs4	G3HEJ6	G3HEJ7	Bardet-Biedl syndrome 4 protein-like.	Bardet-Biedl syndrome 4 protein-like.	0.450
I79_015426	Ahi1	G3HWP8	G3GW72	X-linked retinitis pigmentosa GTPase regulator-interacting protein 1.	Jouberin.	0.439
I79_016044	Alms1	G3HYB9	G3HYB8	Alstrom syndrome protein 1-like.	Alstrom syndrome protein 1-like.	0.925
I79_019797	Ntrk2	G3I8D3	G3I8D2	BDNF/NT-3 growth factors receptor.	Tyrosine-protein kinase receptor.	0.784
Nrl	Rpgrip1l	G3HDF1	G3H0R2	Neural retina-specific leucine zipper protein.	Protein fantom.	0.410
Ntrk2	I79_019797	G3I8D2	G3I8D3	Tyrosine-protein kinase receptor.	BDNF/NT-3 growth factors receptor.	0.784
Rpgrip1l	Ahi1	G3H0R2	G3GW72	Protein fantom.	Jouberin.	0.801
Rpgrip1l	Nrl	G3H0R2	G3HDF1	Protein fantom.	Neural retina-specific leucine zipper protein.	0.410