(7 nodes) Transcription export complex 2 network (Cricetulus griseus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Cetn2	Centrin-2. (172 aa)
	Grtp1	PCI domain-containing protein 2. (661 aa)
	Mcm3ap	80 kDa MCM3-associated protein. (1979 aa)
	Cetn3	Centrin-3. (167 aa)
	Pcid2	PCI domain-containing protein 2. (123 aa)
	CgPICR_014540	Centrin-2-like protein. (163 aa)
	ENY2	Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates both histones H2A and H2B. The SAGA complex is recruited to specific gene promoters by activators such as MYC, where it is required for trans [...] (131 aa)

Your Current Organism:

Cricetulus griseus

NCBI taxonomy Id: 10029
Other names: C. griseus, CHO cell lines, Chinese hamster, Chinese hamsters, Cricetulus aureus, Cricetulus barabensis griseus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Cetn2	Cetn3	G3II80	G3HL74	Centrin-2.	Centrin-3.	0.511
Cetn2	CgPICR_014540	G3II80	G3HJF9	Centrin-2.	Centrin-2-like protein.	0.900
Cetn2	ENY2	G3II80	G3HAU8	Centrin-2.	Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates both histones H2A and H2B. The SAGA complex is recruited to specific gene promoters by activators such as MYC, where it is required for trans [...]	0.795
Cetn2	Grtp1	G3II80	G3HK55	Centrin-2.	PCI domain-containing protein 2.	0.603
Cetn2	Mcm3ap	G3II80	G3H8X9	Centrin-2.	80 kDa MCM3-associated protein.	0.787
Cetn2	Pcid2	G3II80	G3HTJ0	Centrin-2.	PCI domain-containing protein 2.	0.603
Cetn3	Cetn2	G3HL74	G3II80	Centrin-3.	Centrin-2.	0.511
Cetn3	ENY2	G3HL74	G3HAU8	Centrin-3.	Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates both histones H2A and H2B. The SAGA complex is recruited to specific gene promoters by activators such as MYC, where it is required for trans [...]	0.974
Cetn3	Grtp1	G3HL74	G3HK55	Centrin-3.	PCI domain-containing protein 2.	0.664
Cetn3	Mcm3ap	G3HL74	G3H8X9	Centrin-3.	80 kDa MCM3-associated protein.	0.993
Cetn3	Pcid2	G3HL74	G3HTJ0	Centrin-3.	PCI domain-containing protein 2.	0.664
CgPICR_014540	Cetn2	G3HJF9	G3II80	Centrin-2-like protein.	Centrin-2.	0.900
CgPICR_014540	ENY2	G3HJF9	G3HAU8	Centrin-2-like protein.	Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates both histones H2A and H2B. The SAGA complex is recruited to specific gene promoters by activators such as MYC, where it is required for trans [...]	0.694
CgPICR_014540	Grtp1	G3HJF9	G3HK55	Centrin-2-like protein.	PCI domain-containing protein 2.	0.603
CgPICR_014540	Mcm3ap	G3HJF9	G3H8X9	Centrin-2-like protein.	80 kDa MCM3-associated protein.	0.680
CgPICR_014540	Pcid2	G3HJF9	G3HTJ0	Centrin-2-like protein.	PCI domain-containing protein 2.	0.603
ENY2	Cetn2	G3HAU8	G3II80	Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates both histones H2A and H2B. The SAGA complex is recruited to specific gene promoters by activators such as MYC, where it is required for trans [...]	Centrin-2.	0.795
ENY2	Cetn3	G3HAU8	G3HL74	Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates both histones H2A and H2B. The SAGA complex is recruited to specific gene promoters by activators such as MYC, where it is required for trans [...]	Centrin-3.	0.974
ENY2	CgPICR_014540	G3HAU8	G3HJF9	Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates both histones H2A and H2B. The SAGA complex is recruited to specific gene promoters by activators such as MYC, where it is required for trans [...]	Centrin-2-like protein.	0.694
ENY2	Grtp1	G3HAU8	G3HK55	Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates both histones H2A and H2B. The SAGA complex is recruited to specific gene promoters by activators such as MYC, where it is required for trans [...]	PCI domain-containing protein 2.	0.814