STRINGSTRING
SNRPD1 SNRPD1 I79_026147 I79_026147 I79_026098 I79_026098 I79_026082 I79_026082 I79_026076 I79_026076 I79_026056 I79_026056 I79_025983 I79_025983 I79_025978 I79_025978 I79_025952 I79_025952 I79_025881 I79_025881 I79_025821 I79_025821 I79_024092 I79_024092 Prpf8 Prpf8 Srrm2 Srrm2 Rsrp1 Rsrp1 I79_022290 I79_022290 I79_021945 I79_021945 I79_018336 I79_018336 Bud31 Bud31 Snrpb2 Snrpb2 Snrpd3 Snrpd3 I79_015729 I79_015729 Xab2 Xab2 I79_015143 I79_015143 I79_014008 I79_014008 Cwc15 Cwc15 I79_013671 I79_013671 H671_1g3186 H671_1g3186 SNRPD2 SNRPD2 I79_012442 I79_012442 Ppie Ppie Eftud2 Eftud2 Ppil1 Ppil1 I79_010162 I79_010162 CgPICR_013477 CgPICR_013477 Bcas2 Bcas2 Snrpf Snrpf Snw1 Snw1 Aqr Aqr Plrg1 Plrg1 Snrpa1 Snrpa1 Snrpb Snrpb I79_003378 I79_003378 I79_003075 I79_003075 Cdc40 Cdc40 Crnkl1 Crnkl1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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SNRPD1Small nuclear ribonucleoprotein Sm D1; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. May act as a charged protein scaffold to promote snRNP assembly or strengthen snRNP-snRNP interactions through non-specific electrostatic contacts with RNA. (119 aa)
I79_026147ATP-dependent RNA helicase DHX8. (118 aa)
I79_026098ATP-dependent RNA helicase DHX8. (79 aa)
I79_026082ATP-dependent RNA helicase DHX8. (59 aa)
I79_026076ATP-dependent RNA helicase DHX8. (79 aa)
I79_026056Pre-mRNA-processing-splicing factor 8. (184 aa)
I79_025983Pre-mRNA-processing-splicing factor 8. (197 aa)
I79_025978ATP-dependent RNA helicase DHX8. (169 aa)
I79_025952ATP-dependent RNA helicase DHX8. (113 aa)
I79_025881Pre-mRNA-processing-splicing factor 8. (318 aa)
I79_025821Pre-mRNA-processing-splicing factor 8. (264 aa)
I79_024092Pre-mRNA-processing-splicing factor 8. (189 aa)
Prpf8Pre-mRNA-processing-splicing factor 8. (365 aa)
Srrm2Serine/arginine repetitive matrix protein 2. (2791 aa)
Rsrp1Pre-mRNA-splicing factor SYF2. (213 aa)
I79_022290U2 small nuclear ribonucleoprotein B. (113 aa)
I79_021945Pre-mRNA-processing factor 19. (487 aa)
I79_018336Pleiotropic regulator 1. (99 aa)
Bud31Protein BUD31-like. (144 aa)
Snrpb2U2 small nuclear ribonucleoprotein B. (180 aa)
Snrpd3Small nuclear ribonucleoprotein Sm D3. (84 aa)
I79_015729Small nuclear ribonucleoprotein G; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. (82 aa)
Xab2Pre-mRNA-splicing factor SYF1. (855 aa)
I79_015143Small nuclear ribonucleoprotein G; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. (76 aa)
I79_014008Pleiotropic regulator 1. (149 aa)
Cwc15Protein CWC15-like. (229 aa)
I79_013671Pre-mRNA-splicing factor RBM22. (241 aa)
H671_1g3186Pre-mRNA-splicing factor SPF27-like protein. (144 aa)
SNRPD2Small nuclear ribonucleoprotein Sm D2; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. (108 aa)
I79_012442Pleiotropic regulator 1. (161 aa)
PpiePeptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily. (301 aa)
Eftud2116 kDa U5 small nuclear ribonucleoprotein component. (972 aa)
Ppil1Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (166 aa)
I79_010162Small nuclear ribonucleoprotein G; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. (76 aa)
CgPICR_013477Small nuclear ribonucleoprotein G; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. (76 aa)
Bcas2Pre-mRNA-splicing factor SPF27. (68 aa)
SnrpfSmall nuclear ribonucleoprotein F. (67 aa)
Snw1SNW domain-containing protein 1. (536 aa)
AqrRNA helicase aquarius; Intron-binding spliceosomal protein required to link pre-mRNA splicing and snoRNP (small nucleolar ribonucleoprotein) biogenesis. Plays a key role in position-dependent assembly of intron-encoded box C/D small snoRNP, splicing being required for snoRNP assembly. May act by helping the folding of the snoRNA sequence. Binds to intron of pre- mRNAs in a sequence-independent manner, contacting the region between snoRNA and the branchpoint of introns (40 nucleotides upstream of the branchpoint) during the late stages of splicing. (1472 aa)
Plrg1Pleiotropic regulator 1. (384 aa)
Snrpa1U2 small nuclear ribonucleoprotein A. (95 aa)
SnrpbSmall nuclear ribonucleoprotein-associated protein. (223 aa)
I79_003378Pleiotropic regulator 1. (120 aa)
I79_003075Small nuclear ribonucleoprotein G. (51 aa)
Cdc40Pre-mRNA-processing factor 17. (579 aa)
Crnkl1Crooked neck-like protein 1. (690 aa)
Your Current Organism:
Cricetulus griseus
NCBI taxonomy Id: 10029
Other names: C. griseus, CHO cell lines, Chinese hamster, Chinese hamsters, Cricetulus aureus, Cricetulus barabensis griseus
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