(15 nodes) Kidney mesenchyme development network (Cricetulus griseus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Bmp7	Bone morphogenetic protein 7. (430 aa)
	I79_006225	Sonic hedgehog protein. (226 aa)
	I79_006254	Bone morphogenetic protein 4. (406 aa)
	I79_025625	Polycystin-2. (318 aa)
	I79_024483	Polycystin-2. (192 aa)
	Amer1	Protein FAM123B. (1113 aa)
	Six1	Homeobox protein SIX1. (284 aa)
	I79_022007	Homeobox protein SIX4. (673 aa)
	I79_021155	Paired box protein Pax-2. (503 aa)
	Six2	Homeobox protein SIX2. (299 aa)
	Tcf21	Transcription factor 21. (179 aa)
	Smad4	Mothers against decapentaplegic-like 4. (259 aa)
	Pdgfrb	Beta-type platelet-derived growth factor receptor. (528 aa)
	I79_013660	Beta-type platelet-derived growth factor receptor. (454 aa)
	Osr1	Protein odd-skipped-related 1. (266 aa)

Your Current Organism:

Cricetulus griseus

NCBI taxonomy Id: 10029
Other names: C. griseus, CHO cell lines, Chinese hamster, Chinese hamsters, Cricetulus aureus, Cricetulus barabensis griseus

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Bmp7	I79_006225	G3HBL1	G3H796	Bone morphogenetic protein 7.	Sonic hedgehog protein.	0.444
Bmp7	I79_006254	G3HBL1	G3H7C4	Bone morphogenetic protein 7.	Bone morphogenetic protein 4.	0.808
Bmp7	Smad4	G3HBL1	G3HTR4	Bone morphogenetic protein 7.	Mothers against decapentaplegic-like 4.	0.634
I79_006225	Bmp7	G3H796	G3HBL1	Sonic hedgehog protein.	Bone morphogenetic protein 7.	0.444
I79_006225	I79_006254	G3H796	G3H7C4	Sonic hedgehog protein.	Bone morphogenetic protein 4.	0.605
I79_006254	Bmp7	G3H7C4	G3HBL1	Bone morphogenetic protein 4.	Bone morphogenetic protein 7.	0.808
I79_006254	I79_006225	G3H7C4	G3H796	Bone morphogenetic protein 4.	Sonic hedgehog protein.	0.605
I79_006254	Smad4	G3H7C4	G3HTR4	Bone morphogenetic protein 4.	Mothers against decapentaplegic-like 4.	0.914
I79_013660	Pdgfrb	G3HS34	G3HS35	Beta-type platelet-derived growth factor receptor.	Beta-type platelet-derived growth factor receptor.	0.892
I79_021155	Six1	G3IBX2	G3IE65	Paired box protein Pax-2.	Homeobox protein SIX1.	0.477
I79_021155	Six2	G3IBX2	G3GV57	Paired box protein Pax-2.	Homeobox protein SIX2.	0.474
I79_024483	I79_025625	G3IKT0	G3INT6	Polycystin-2.	Polycystin-2.	0.897
I79_025625	I79_024483	G3INT6	G3IKT0	Polycystin-2.	Polycystin-2.	0.897
Pdgfrb	I79_013660	G3HS35	G3HS34	Beta-type platelet-derived growth factor receptor.	Beta-type platelet-derived growth factor receptor.	0.892
Six1	I79_021155	G3IE65	G3IBX2	Homeobox protein SIX1.	Paired box protein Pax-2.	0.477
Six2	I79_021155	G3GV57	G3IBX2	Homeobox protein SIX2.	Paired box protein Pax-2.	0.474
Smad4	Bmp7	G3HTR4	G3HBL1	Mothers against decapentaplegic-like 4.	Bone morphogenetic protein 7.	0.634
Smad4	I79_006254	G3HTR4	G3H7C4	Mothers against decapentaplegic-like 4.	Bone morphogenetic protein 4.	0.914