(22 nodes) Nephric duct morphogenesis network (Cricetulus griseus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Gata3	Trans-acting T-cell-specific transcription factor GATA-3. (443 aa)
	I79_000700	Receptor protein-tyrosine kinase. (871 aa)
	I79_001024	Ephrin-B2; Belongs to the ephrin family. (373 aa)
	Ahi1	Jouberin. (988 aa)
	I79_006254	Bone morphogenetic protein 4. (406 aa)
	Lhx1	LIM/homeobox protein Lhx1. (84 aa)
	Osr1	Protein odd-skipped-related 1. (266 aa)
	I79_009708	Glypican-3; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family. (332 aa)
	I79_013907	Ephrin-B2. (148 aa)
	I79_018306	Ephrin type-A receptor 4. (932 aa)
	Hnf1b	Hepatocyte nuclear factor 1-beta. (593 aa)
	I79_021151	Ephrin-B2. (178 aa)
	I79_021155	Paired box protein Pax-2. (503 aa)
	I79_024975	Ephrin-B2. (148 aa)
	I79_025433	Ephrin-B2; Belongs to the ephrin family. (70 aa)
	I79_025496	Ephrin-B2. (147 aa)
	I79_025497	Ephrin-B2; Belongs to the ephrin family. (69 aa)
	I79_025518	Ephrin-B2. (123 aa)
	I79_025535	Ephrin-B2. (125 aa)
	Wnt9b	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (331 aa)
	I79_025726	Ephrin-B2. (121 aa)
	I79_026231	Ephrin-B2; Belongs to the ephrin family. (68 aa)

Your Current Organism:

Cricetulus griseus

NCBI taxonomy Id: 10029
Other names: C. griseus, CHO cell lines, Chinese hamster, Chinese hamsters, Cricetulus aureus, Cricetulus barabensis griseus

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Gata3	Lhx1	G3GR59	G3H9D2	Trans-acting T-cell-specific transcription factor GATA-3.	LIM/homeobox protein Lhx1.	0.437
I79_000700	I79_001024	G3GSS9	G3GTN7	Receptor protein-tyrosine kinase.	Ephrin-B2; Belongs to the ephrin family.	0.451
I79_000700	I79_013907	G3GSS9	G3HSR3	Receptor protein-tyrosine kinase.	Ephrin-B2.	0.451
I79_000700	I79_021151	G3GSS9	G3IBW8	Receptor protein-tyrosine kinase.	Ephrin-B2.	0.451
I79_000700	I79_024975	G3GSS9	G3IM42	Receptor protein-tyrosine kinase.	Ephrin-B2.	0.451
I79_000700	I79_025433	G3GSS9	G3INB8	Receptor protein-tyrosine kinase.	Ephrin-B2; Belongs to the ephrin family.	0.451
I79_000700	I79_025496	G3GSS9	G3INH2	Receptor protein-tyrosine kinase.	Ephrin-B2.	0.451
I79_000700	I79_025497	G3GSS9	G3INH3	Receptor protein-tyrosine kinase.	Ephrin-B2; Belongs to the ephrin family.	0.451
I79_000700	I79_025518	G3GSS9	G3INJ3	Receptor protein-tyrosine kinase.	Ephrin-B2.	0.451
I79_000700	I79_025535	G3GSS9	G3INK8	Receptor protein-tyrosine kinase.	Ephrin-B2.	0.451
I79_000700	I79_025726	G3GSS9	G3IP25	Receptor protein-tyrosine kinase.	Ephrin-B2.	0.451
I79_000700	I79_026231	G3GSS9	G3IQC0	Receptor protein-tyrosine kinase.	Ephrin-B2; Belongs to the ephrin family.	0.451
I79_001024	I79_000700	G3GTN7	G3GSS9	Ephrin-B2; Belongs to the ephrin family.	Receptor protein-tyrosine kinase.	0.451
I79_001024	I79_018306	G3GTN7	G3I4C9	Ephrin-B2; Belongs to the ephrin family.	Ephrin type-A receptor 4.	0.549
I79_006254	I79_009708	G3H7C4	G3HGH9	Bone morphogenetic protein 4.	Glypican-3; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family.	0.621
I79_009708	I79_006254	G3HGH9	G3H7C4	Glypican-3; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family.	Bone morphogenetic protein 4.	0.621
I79_013907	I79_000700	G3HSR3	G3GSS9	Ephrin-B2.	Receptor protein-tyrosine kinase.	0.451
I79_013907	I79_018306	G3HSR3	G3I4C9	Ephrin-B2.	Ephrin type-A receptor 4.	0.549
I79_018306	I79_001024	G3I4C9	G3GTN7	Ephrin type-A receptor 4.	Ephrin-B2; Belongs to the ephrin family.	0.549
I79_018306	I79_013907	G3I4C9	G3HSR3	Ephrin type-A receptor 4.	Ephrin-B2.	0.549