(26 nodes) Metanephric collecting duct development network (Cricetulus griseus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	I79_025487	Disks large-like 5. (92 aa)
	I79_019973	Disks large-like 5. (219 aa)
	Dlg5	Disks large-like 5; Belongs to the MAGUK family. (1873 aa)
	I79_006225	Sonic hedgehog protein. (226 aa)
	I79_006254	Bone morphogenetic protein 4. (406 aa)
	Pkd1	Polycystin-1. (3717 aa)
	Akr1b1	Aldose reductase. (316 aa)
	H671_2g6716	Calbindin-like protein. (211 aa)
	I79_013795	Disks large-like 5. (96 aa)
	Aqp2	Aquaporin-2; Belongs to the MIP/aquaporin (TC 1.A.8) family. (344 aa)
	I79_018593	Disks large-like 5. (121 aa)
	I79_021155	Paired box protein Pax-2. (503 aa)
	Wnt7b	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (353 aa)
	I79_021445	Disks large-like 5. (294 aa)
	I79_021446	Disks large-like 5. (133 aa)
	I79_021447	Disks large-like 5. (129 aa)
	I79_021448	Disks large-like 5. (270 aa)
	I79_021890	Disks large-like 5. (101 aa)
	I79_022205	Disks large-like 5. (99 aa)
	Ptch1	Protein patched-like 1. (1114 aa)
	I79_024172	Aldose reductase. (150 aa)
	I79_024446	Disks large-like 5. (162 aa)
	I79_024447	Disks large-like 5. (99 aa)
	I79_025180	Disks large-like 5. (144 aa)
	I79_025338	Disks large-like 5. (203 aa)
	I79_025450	Disks large-like 5. (167 aa)

Your Current Organism:

Cricetulus griseus

NCBI taxonomy Id: 10029
Other names: C. griseus, CHO cell lines, Chinese hamster, Chinese hamsters, Cricetulus aureus, Cricetulus barabensis griseus

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
I79_006225	I79_006254	G3H796	G3H7C4	Sonic hedgehog protein.	Bone morphogenetic protein 4.	0.605
I79_006225	Ptch1	G3H796	G3IJP5	Sonic hedgehog protein.	Protein patched-like 1.	0.983
I79_006254	I79_006225	G3H7C4	G3H796	Bone morphogenetic protein 4.	Sonic hedgehog protein.	0.605
I79_006254	Ptch1	G3H7C4	G3IJP5	Bone morphogenetic protein 4.	Protein patched-like 1.	0.561
I79_019973	I79_024447	G3I8U1	G3IKP4	Disks large-like 5.	Disks large-like 5.	0.470
I79_021445	I79_021890	G3ICP7	G3IDV2	Disks large-like 5.	Disks large-like 5.	0.505
I79_021446	I79_021890	G3ICP8	G3IDV2	Disks large-like 5.	Disks large-like 5.	0.508
I79_021890	I79_021445	G3IDV2	G3ICP7	Disks large-like 5.	Disks large-like 5.	0.505
I79_021890	I79_021446	G3IDV2	G3ICP8	Disks large-like 5.	Disks large-like 5.	0.508
I79_024447	I79_019973	G3IKP4	G3I8U1	Disks large-like 5.	Disks large-like 5.	0.470
Ptch1	I79_006225	G3IJP5	G3H796	Protein patched-like 1.	Sonic hedgehog protein.	0.983
Ptch1	I79_006254	G3IJP5	G3H7C4	Protein patched-like 1.	Bone morphogenetic protein 4.	0.561