25 items (Cricetulus griseus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	I79_019038	Nck-associated protein 1-like. (1065 aa)
	I79_022271	Ras-related C3 botulinum toxin substrate 2. (178 aa)
	I79_022295	Dynamin-1-like protein. (310 aa)
	Rac1	Ras-related C3 botulinum toxin substrate 1. (148 aa)
	Camk1d	Calcium/calmodulin-dependent protein kinase type 1D. (289 aa)
	C1qbp	Complement component 1 Q subcomponent-binding protein, mitochondrial. (209 aa)
	Mdk	Midkine. (160 aa)
	Edn1	Endothelin-1. (202 aa)
	Dapk2	Death-associated protein kinase 2. (358 aa)
	Ednra	Endothelin-1 receptor; Belongs to the G-protein coupled receptor 1 family. (412 aa)
	H671_3g11194	Protein FAM65B-like protein. (890 aa)
	I79_008828	Lymphotactin. (114 aa)
	I79_009350	Toll/interleukin-1 receptor domain-containing adapter protein. (245 aa)
	I79_009996	Motile sperm domain-containing protein 2. (434 aa)
	Mcu	Coiled-coil domain-containing protein 109A. (219 aa)
	Ccl21	C-C motif chemokine 21a. (148 aa)
	Ccl19	C-C motif chemokine. (117 aa)
	I79_013066	Dysferlin. (1296 aa)
	Il23a	Interleukin-23 subunit alpha. (196 aa)
	Cd74	H-2 class II histocompatibility antigen gamma chain. (329 aa)
	I79_015624	Thrombospondin-4. (960 aa)
	IL1B	Multifunctional fusion protein; Potent proinflammatory cytokine. Initially discovered as the major endogenous pyrogen, induces prostaglandin synthesis, neutrophil influx and activation, T-cell activation and cytokine production, B- cell activation and antibody production, and fibroblast proliferation and collagen production; Belongs to the IL-1 family. (237 aa)
	C3ar1	C3a anaphylatoxin chemotactic receptor; Belongs to the G-protein coupled receptor 1 family. (426 aa)
	Ccr7	C-C chemokine receptor type 7; Belongs to the G-protein coupled receptor 1 family. (378 aa)
	Cxcr2	High affinity interleukin-8 receptor B; Belongs to the G-protein coupled receptor 1 family. (359 aa)

Your Current Organism:

Cricetulus griseus

NCBI taxonomy Id: 10029
Other names: C. griseus, CHO cell lines, Chinese hamster, Chinese hamsters, Cricetulus aureus, Cricetulus barabensis griseus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Ccl19	Ccl21	G3HN20	G3HN19	C-C motif chemokine.	C-C motif chemokine 21a.	0.990
Ccl19	Ccr7	G3HN20	G3I5N8	C-C motif chemokine.	C-C chemokine receptor type 7; Belongs to the G-protein coupled receptor 1 family.	0.999
Ccl19	Cxcr2	G3HN20	G3IMN7	C-C motif chemokine.	High affinity interleukin-8 receptor B; Belongs to the G-protein coupled receptor 1 family.	0.854
Ccl21	Ccl19	G3HN19	G3HN20	C-C motif chemokine 21a.	C-C motif chemokine.	0.990
Ccl21	Ccr7	G3HN19	G3I5N8	C-C motif chemokine 21a.	C-C chemokine receptor type 7; Belongs to the G-protein coupled receptor 1 family.	0.999
Ccl21	Cxcr2	G3HN19	G3IMN7	C-C motif chemokine 21a.	High affinity interleukin-8 receptor B; Belongs to the G-protein coupled receptor 1 family.	0.849
Ccr7	Ccl19	G3I5N8	G3HN20	C-C chemokine receptor type 7; Belongs to the G-protein coupled receptor 1 family.	C-C motif chemokine.	0.999
Ccr7	Ccl21	G3I5N8	G3HN19	C-C chemokine receptor type 7; Belongs to the G-protein coupled receptor 1 family.	C-C motif chemokine 21a.	0.999
Ccr7	Cxcr2	G3I5N8	G3IMN7	C-C chemokine receptor type 7; Belongs to the G-protein coupled receptor 1 family.	High affinity interleukin-8 receptor B; Belongs to the G-protein coupled receptor 1 family.	0.575
Ccr7	I79_008828	G3I5N8	G3HE54	C-C chemokine receptor type 7; Belongs to the G-protein coupled receptor 1 family.	Lymphotactin.	0.827
Ccr7	IL1B	G3I5N8	G3I1B0	C-C chemokine receptor type 7; Belongs to the G-protein coupled receptor 1 family.	Multifunctional fusion protein; Potent proinflammatory cytokine. Initially discovered as the major endogenous pyrogen, induces prostaglandin synthesis, neutrophil influx and activation, T-cell activation and cytokine production, B- cell activation and antibody production, and fibroblast proliferation and collagen production; Belongs to the IL-1 family.	0.480
Cd74	Cxcr2	G3HS40	G3IMN7	H-2 class II histocompatibility antigen gamma chain.	High affinity interleukin-8 receptor B; Belongs to the G-protein coupled receptor 1 family.	0.838
Cxcr2	Ccl19	G3IMN7	G3HN20	High affinity interleukin-8 receptor B; Belongs to the G-protein coupled receptor 1 family.	C-C motif chemokine.	0.854
Cxcr2	Ccl21	G3IMN7	G3HN19	High affinity interleukin-8 receptor B; Belongs to the G-protein coupled receptor 1 family.	C-C motif chemokine 21a.	0.849
Cxcr2	Ccr7	G3IMN7	G3I5N8	High affinity interleukin-8 receptor B; Belongs to the G-protein coupled receptor 1 family.	C-C chemokine receptor type 7; Belongs to the G-protein coupled receptor 1 family.	0.575
Cxcr2	Cd74	G3IMN7	G3HS40	High affinity interleukin-8 receptor B; Belongs to the G-protein coupled receptor 1 family.	H-2 class II histocompatibility antigen gamma chain.	0.838
Cxcr2	I79_008828	G3IMN7	G3HE54	High affinity interleukin-8 receptor B; Belongs to the G-protein coupled receptor 1 family.	Lymphotactin.	0.781
Cxcr2	IL1B	G3IMN7	G3I1B0	High affinity interleukin-8 receptor B; Belongs to the G-protein coupled receptor 1 family.	Multifunctional fusion protein; Potent proinflammatory cytokine. Initially discovered as the major endogenous pyrogen, induces prostaglandin synthesis, neutrophil influx and activation, T-cell activation and cytokine production, B- cell activation and antibody production, and fibroblast proliferation and collagen production; Belongs to the IL-1 family.	0.513
Edn1	Ednra	G3H0G9	G3H9A8	Endothelin-1.	Endothelin-1 receptor; Belongs to the G-protein coupled receptor 1 family.	0.999
Edn1	IL1B	G3H0G9	G3I1B0	Endothelin-1.	Multifunctional fusion protein; Potent proinflammatory cytokine. Initially discovered as the major endogenous pyrogen, induces prostaglandin synthesis, neutrophil influx and activation, T-cell activation and cytokine production, B- cell activation and antibody production, and fibroblast proliferation and collagen production; Belongs to the IL-1 family.	0.544