(50 nodes) Autophagosome maturation network (Cricetulus griseus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Map1lc3b	Microtubule-associated proteins 1A/1B light chain 3B. (125 aa)
	I79_000897	Sorting nexin-14. (885 aa)
	Chmp7	Charged multivesicular body protein 7. (449 aa)
	Chmp6	Charged multivesicular body protein 6. (176 aa)
	CgPICR_012593	Charged multivesicular body protein 5. (131 aa)
	Pik3r4	Phosphoinositide 3-kinase regulatory subunit 4. (993 aa)
	I79_003250	Phosphoinositide 3-kinase regulatory subunit 4. (194 aa)
	I79_004283	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. (906 aa)
	Vps33a	Vacuolar protein sorting-associated protein 33A; Belongs to the STXBP/unc-18/SEC1 family. (597 aa)
	Lix1l	LIX1-like protein. (228 aa)
	Vps16	Vacuolar protein sorting-associated protein 16 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Believed to act as a core component of the putative HOPS and CORVET endosomal tethering complexes. Belongs to the VPS16 family. (839 aa)
	Atg14	Uncharacterized protein KIAA0831. (375 aa)
	Epg5	UPF0493 protein KIAA1632. (522 aa)
	I79_007394	UPF0493 protein KIAA1632. (148 aa)
	Chmp4b	Charged multivesicular body protein 4b. (190 aa)
	Map1lc3a	Microtubule-associated proteins 1A/1B light chain 3A. (278 aa)
	Calm2	Calmodulin; Belongs to the calmodulin family. (161 aa)
	I79_008062	SNARE-associated protein Snapin. (107 aa)
	Snap29	Synaptosomal-associated protein 29. (192 aa)
	Becn1	Beclin-1. (448 aa)
	Mfsd8	Major facilitator superfamily domain-containing protein 8. (309 aa)
	Chmp1b	Charged multivesicular body protein 1b. (196 aa)
	I79_012144	Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family. (2171 aa)
	Vamp8	Vesicle-associated membrane protein 8. (101 aa)
	Stx17	Syntaxin-17; Belongs to the syntaxin family. (263 aa)
	I79_016131	Charged multivesicular body protein 6. (186 aa)
	I79_020705	Ubiquilin-1. (168 aa)
	Chmp5	Charged multivesicular body protein 5. (160 aa)
	Stpg4	Calmodulin; Belongs to the calmodulin family. (211 aa)
	I79_020120	Uncharacterized protein C13orf18-like. (318 aa)
	Rubcnl	Uncharacterized protein C13orf18-like. (339 aa)
	I79_019318	Microtubule-associated proteins 1A/1B light chain 3B. (71 aa)
	I79_018847	Calmodulin; Belongs to the calmodulin family. (152 aa)
	Chmp4c	Charged multivesicular body protein 4c. (232 aa)
	I79_017699	Charged multivesicular body protein 2a. (72 aa)
	I79_016257	Lysosome-associated membrane glycoprotein 2. (323 aa)
	I79_016240	Beclin-1. (119 aa)
	I79_015475	Mucolipin-1. (532 aa)
	Pik3c3	Phosphatidylinositol 3-kinase catalytic subunit type 3. (822 aa)
	I79_015685	EF-hand domain-containing protein. (101 aa)
	I79_015695	Microtubule-associated proteins 1A/1B light chain 3B. (257 aa)
	I79_015259	Charged multivesicular body protein 1b-2. (196 aa)
	Uvrag	UV radiation resistance-associated gene protein. (596 aa)
	CgPICR_017756	Calmodulin-like protein; Belongs to the calmodulin family. (98 aa)
	I79_024941	Calmodulin; Belongs to the calmodulin family. (149 aa)
	Cln3	Battenin. (400 aa)
	Chmp2b	Charged multivesicular body protein 2b. (202 aa)
	I79_021267	Tectonin beta-propeller repeat-containing protein 1. (1166 aa)
	I79_020786	Calmodulin; Belongs to the calmodulin family. (141 aa)
	Chmp1a	Charged multivesicular body protein 1a. (196 aa)

Your Current Organism:

Cricetulus griseus

NCBI taxonomy Id: 10029
Other names: C. griseus, CHO cell lines, Chinese hamster, Chinese hamsters, Cricetulus aureus, Cricetulus barabensis griseus

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Atg14	Becn1	G3H7A9	G3HLZ1	Uncharacterized protein KIAA0831.	Beclin-1.	0.999
Atg14	Epg5	G3H7A9	G3HAE4	Uncharacterized protein KIAA0831.	UPF0493 protein KIAA1632.	0.457
Atg14	I79_003250	G3H7A9	G3GZI8	Uncharacterized protein KIAA0831.	Phosphoinositide 3-kinase regulatory subunit 4.	0.968
Atg14	I79_007394	G3H7A9	G3HAE5	Uncharacterized protein KIAA0831.	UPF0493 protein KIAA1632.	0.457
Atg14	I79_008062	G3H7A9	G3HC19	Uncharacterized protein KIAA0831.	SNARE-associated protein Snapin.	0.593
Atg14	I79_015695	G3H7A9	G3HXH2	Uncharacterized protein KIAA0831.	Microtubule-associated proteins 1A/1B light chain 3B.	0.633
Atg14	I79_016240	G3H7A9	G3HYU8	Uncharacterized protein KIAA0831.	Beclin-1.	0.988
Atg14	I79_019318	G3H7A9	G3I736	Uncharacterized protein KIAA0831.	Microtubule-associated proteins 1A/1B light chain 3B.	0.633
Atg14	Map1lc3a	G3H7A9	G3HAP1	Uncharacterized protein KIAA0831.	Microtubule-associated proteins 1A/1B light chain 3A.	0.663
Atg14	Map1lc3b	G3H7A9	G3GRV4	Uncharacterized protein KIAA0831.	Microtubule-associated proteins 1A/1B light chain 3B.	0.633
Atg14	Pik3c3	G3H7A9	G3HX36	Uncharacterized protein KIAA0831.	Phosphatidylinositol 3-kinase catalytic subunit type 3.	0.999
Atg14	Pik3r4	G3H7A9	G3GZI7	Uncharacterized protein KIAA0831.	Phosphoinositide 3-kinase regulatory subunit 4.	0.997
Atg14	Snap29	G3H7A9	G3HFZ8	Uncharacterized protein KIAA0831.	Synaptosomal-associated protein 29.	0.982
Atg14	Stx17	G3H7A9	G3HRG9	Uncharacterized protein KIAA0831.	Syntaxin-17; Belongs to the syntaxin family.	0.989
Atg14	Uvrag	G3H7A9	G3HUS1	Uncharacterized protein KIAA0831.	UV radiation resistance-associated gene protein.	0.779
Atg14	Vamp8	G3H7A9	G3HPZ0	Uncharacterized protein KIAA0831.	Vesicle-associated membrane protein 8.	0.682
Becn1	Atg14	G3HLZ1	G3H7A9	Beclin-1.	Uncharacterized protein KIAA0831.	0.999
Becn1	I79_003250	G3HLZ1	G3GZI8	Beclin-1.	Phosphoinositide 3-kinase regulatory subunit 4.	0.819
Becn1	I79_015695	G3HLZ1	G3HXH2	Beclin-1.	Microtubule-associated proteins 1A/1B light chain 3B.	0.593
Becn1	I79_019318	G3HLZ1	G3I736	Beclin-1.	Microtubule-associated proteins 1A/1B light chain 3B.	0.593