STRINGSTRING
Nbas Nbas Srsf1 Srsf1 Syncrip Syncrip Vip Vip H671_3g9885 H671_3g9885 I79_001883 I79_001883 C1qbp C1qbp Srsf4 Srsf4 CgPICR_003913 CgPICR_003913 Hnrnpa2b1 Hnrnpa2b1 Traf5 Traf5 I79_004582 I79_004582 Pkp1 Pkp1 Rbm10 Rbm10 Rbm46 Rbm46 I79_005612 I79_005612 I79_005818 I79_005818 Tent5a Tent5a Hnrnpu Hnrnpu I79_006472 I79_006472 Axin2 Axin2 Pcbp4 Pcbp4 Sap18 Sap18 Tent5c Tent5c Thrap3 Thrap3 E2f1 E2f1 I79_007488 I79_007488 Noct Noct Ikbke Ikbke Mapkapk2 Mapkapk2 Tob1 Tob1 Zc3h14 Zc3h14 I79_007979 I79_007979 Tent4a Tent4a Srsf6 Srsf6 I79_008764 I79_008764 Ptbp1 Ptbp1 Cirbp Cirbp I79_009350 I79_009350 Larp1 Larp1 Secisbp2 Secisbp2 I79_010589 I79_010589 Zfp36 Zfp36 Supt5h Supt5h I79_010806 I79_010806 Igf2bp1 Igf2bp1 Gdnf Gdnf Rnf20 Rnf20 Csde1 Csde1 Igf2bp2 Igf2bp2 Traf3ip2 Traf3ip2 I79_012076 I79_012076 Paip1 Paip1 I79_012168 I79_012168 Ptbp3 Ptbp3 I79_012765 I79_012765 Nras Nras Myd88 Myd88 I79_013410 I79_013410 I79_013537 I79_013537 Srsf7 Srsf7 I79_014603 I79_014603 Cdk9 Cdk9 Dyrk1a Dyrk1a I79_015119 I79_015119 A1cf A1cf Tent5d Tent5d I79_015333 I79_015333 Hnrnpc Hnrnpc U2af2 U2af2 Ctr9 Ctr9 I79_016184 I79_016184 Angel2 Angel2 Dicer1 Dicer1 Nelfe Nelfe I79_017119 I79_017119 Eif4enif1 Eif4enif1 I79_017668 I79_017668 Rnps1 Rnps1 I79_017997 I79_017997 Dnd1 Dnd1 Tardbp Tardbp I79_018871 I79_018871 Srsf9 Srsf9 I79_019198 I79_019198 I79_019199 I79_019199 Hnrnpd Hnrnpd Fus Fus CgPICR_014162 CgPICR_014162 Taf15 Taf15 Pabpc1 Pabpc1 Rnf40 Rnf40 Pkp3 Pkp3 Mtor Mtor Ybx1 Ybx1 Traf2 Traf2 I79_023431 I79_023431 Ccnt1 Ccnt1 I79_024976 I79_024976
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
NbasNeuroblastoma-amplified sequence. (592 aa)
Srsf1Splicing factor, arginine/serine-rich 1, transcript variant 1. (248 aa)
SyncripHeterogeneous nuclear ribonucleoprotein Q. (562 aa)
VipVIP peptides. (170 aa)
H671_3g9885RNA-binding protein 24. (251 aa)
I79_001883ELAV-like protein; Belongs to the RRM elav family. (350 aa)
C1qbpComplement component 1 Q subcomponent-binding protein, mitochondrial. (209 aa)
Srsf4Splicing factor, arginine/serine-rich 4. (368 aa)
CgPICR_003913Heterogeneous nuclear ribonucleoprotein A/B. (211 aa)
Hnrnpa2b1Heterogeneous nuclear ribonucleoproteins A2/B1. (282 aa)
Traf5TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family. (558 aa)
I79_004582Polyadenylate-binding protein 1. (63 aa)
Pkp1Plakophilin-1. (73 aa)
Rbm10RNA-binding protein 10. (1001 aa)
Rbm46Putative RNA-binding protein 46. (503 aa)
I79_005612PAP-associated domain-containing protein 5. (382 aa)
I79_005818Polyadenylate-binding protein 1. (147 aa)
Tent5aProtein FAM46A. (428 aa)
HnrnpuHeterogeneous nuclear ribonucleoprotein U. (512 aa)
I79_006472Polypyrimidine tract-binding protein 1. (119 aa)
Axin2Axin-2. (809 aa)
Pcbp4Poly(RC)-binding protein 4. (403 aa)
Sap18Histone deacetylase complex subunit SAP18. (91 aa)
Tent5cProtein FAM46C. (391 aa)
Thrap3Thyroid hormone receptor-associated protein 3. (307 aa)
E2f1Transcription factor E2F1. (367 aa)
I79_007488Polyadenylate-binding protein 1. (127 aa)
NoctNocturnin. (365 aa)
IkbkeInhibitor of nuclear factor kappa-B kinase subunit epsilon. (640 aa)
Mapkapk2MAPKAPK2. (307 aa)
Tob1Protein Tob1-like protein. (350 aa)
Zc3h14Zinc finger CCCH domain-containing protein 14. (702 aa)
I79_007979Heterogeneous nuclear ribonucleoproteins C1/C2. (228 aa)
Tent4aDNA polymerase sigma. (534 aa)
Srsf6Splicing factor, arginine/serine-rich 6. (210 aa)
I79_008764Heterogeneous nuclear ribonucleoprotein C-like 1. (56 aa)
Ptbp1Polypyrimidine tract-binding protein 1. (528 aa)
CirbpCold-inducible RNA-binding protein. (184 aa)
I79_009350Toll/interleukin-1 receptor domain-containing adapter protein. (245 aa)
Larp1La-related protein 1. (571 aa)
Secisbp2Selenocysteine insertion sequence-binding protein 2. (855 aa)
I79_010589Heterogeneous nuclear ribonucleoprotein C-like 1. (70 aa)
Zfp36Tristetraproline. (315 aa)
Supt5hTranscription elongation factor SPT5. (944 aa)
I79_010806Cold shock domain-containing protein E1. (255 aa)
Igf2bp1Insulin-like growth factor 2 mRNA-binding protein 1. (552 aa)
GdnfGlial cell line-derived neurotrophic factor. (160 aa)
Rnf20E3 ubiquitin protein ligase; Belongs to the BRE1 family. (975 aa)
Csde1Cold shock domain-containing protein E1. (95 aa)
Igf2bp2Insulin-like growth factor 2 mRNA-binding protein 2. (530 aa)
Traf3ip2Adapter protein CIKS. (560 aa)
I79_012076FUS-interacting serine-arginine-rich protein 1. (72 aa)
Paip1Polyadenylate-binding protein-interacting protein 1. (366 aa)
I79_012168Fragile X mental retardation 1 protein. (560 aa)
Ptbp3Regulator of differentiation 1. (523 aa)
I79_012765U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (469 aa)
NrasCold shock domain-containing protein E1. (451 aa)
Myd88Myeloid differentiation primary response protein MyD88; Adapter protein involved in the Toll-like receptor and IL-1 receptor signaling pathway in the innate immune response. (296 aa)
I79_013410Apoptotic chromatin condensation inducer in the nucleus. (1230 aa)
I79_013537ELAV-like protein; Belongs to the RRM elav family. (335 aa)
Srsf7Splicing factor, arginine/serine-rich 7. (227 aa)
I79_014603Polyadenylate-binding protein 1. (101 aa)
Cdk9Cell division protein kinase 9; Belongs to the protein kinase superfamily. (372 aa)
Dyrk1aDual specificity tyrosine-phosphorylation-regulated kinase 1A. (761 aa)
I79_015119Insulin-like growth factor 2 mRNA-binding protein 3. (393 aa)
A1cfAPOBEC1 complementation factor. (1001 aa)
Tent5dProtein FAM46D. (265 aa)
I79_015333Natural resistance-associated macrophage protein 1. (436 aa)
HnrnpcHeterogeneous nuclear ribonucleoprotein C-like 1-like isoform 5. (307 aa)
U2af2U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (422 aa)
Ctr9RNA polymerase-associated protein CTR9-like. (1171 aa)
I79_016184Protein FAM46B. (352 aa)
Angel2Protein angel-like 2. (524 aa)
Dicer1Endoribonuclease Dicer; Belongs to the helicase family. Dicer subfamily. (1907 aa)
NelfeNegative elongation factor E. (67 aa)
I79_017119CUG-BP-and ETR-3-like factor 4. (135 aa)
Eif4enif1Eukaryotic translation initiation factor 4E transporter. (984 aa)
I79_017668Splicing factor, arginine/serine-rich 8. (945 aa)
Rnps1RNA-binding protein with serine-rich domain 1. (248 aa)
I79_017997Polyadenylate-binding protein 1. (101 aa)
Dnd1Dead end protein-like 1. (352 aa)
TardbpTAR DNA-binding protein 43. (199 aa)
I79_018871TAR DNA-binding protein 43. (213 aa)
Srsf9Splicing factor, arginine/serine-rich 9. (91 aa)
I79_019198Putative RNA-binding protein 20. (756 aa)
I79_019199Putative RNA-binding protein 20. (349 aa)
HnrnpdHeterogeneous nuclear ribonucleoprotein D0. (257 aa)
FusRNA-binding protein FUS. (205 aa)
CgPICR_014162Polypyrimidine tract-binding protein 1. (575 aa)
Taf15TATA-binding protein-associated factor 2N. (389 aa)
Pabpc1Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (565 aa)
Rnf40E3 ubiquitin protein ligase; Belongs to the BRE1 family. (1001 aa)
Pkp3Plakophilin-3. (711 aa)
MtorSerine/threonine-protein kinase mTOR; Belongs to the PI3/PI4-kinase family. (2520 aa)
Ybx1Nuclease-sensitive element-binding protein 1. (127 aa)
Traf2TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family. (501 aa)
I79_023431Polypyrimidine tract-binding protein 1. (323 aa)
Ccnt1Cyclin-T1; Belongs to the cyclin family. (729 aa)
I79_024976Polypyrimidine tract-binding protein 1. (99 aa)
Your Current Organism:
Cricetulus griseus
NCBI taxonomy Id: 10029
Other names: C. griseus, CHO cell lines, Chinese hamster, Chinese hamsters, Cricetulus aureus, Cricetulus barabensis griseus
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