STRINGSTRING
I79_025881 I79_025881 I79_025858 I79_025858 I79_025821 I79_025821 I79_025692 I79_025692 I79_025672 I79_025672 I79_025570 I79_025570 I79_025509 I79_025509 Cd2bp2 Cd2bp2 I79_022499 I79_022499 I79_024174 I79_024174 I79_022489 I79_022489 Prpf40b Prpf40b I79_022290 I79_022290 Ppih Ppih Larp7 Larp7 I79_021114 I79_021114 CgPICR_008498 CgPICR_008498 I79_020116 I79_020116 Cenatac Cenatac Ddx23 Ddx23 Mepce Mepce I79_018866 I79_018866 Phf5a Phf5a I79_018302 I79_018302 I79_018082 I79_018082 Sart1 Sart1 I79_017249 I79_017249 Snrnp70 Snrnp70 Ddx39b Ddx39b Snrpb2 Snrpb2 Snrpd3 Snrpd3 I79_015729 I79_015729 I79_015143 I79_015143 Arfgef1 Arfgef1 I79_024092 I79_024092 Prpf8 Prpf8 LSM3 LSM3 I79_024025 I79_024025 I79_023508 I79_023508 Prpf18 Prpf18 I79_001965 I79_001965 CgPICR_018104 CgPICR_018104 I79_003075 I79_003075 Sf3b6 Sf3b6 Snrnp200 Snrnp200 I79_003933 I79_003933 I79_004404 I79_004404 Prpf3 Prpf3 Snrpb Snrpb I79_014984 I79_014984 CgPICR_006774 CgPICR_006774 I79_014011 I79_014011 Snrpe Snrpe Usp39 Usp39 SNRPD2 SNRPD2 LSM8 LSM8 I79_012406 I79_012406 LSM5 LSM5 Eftud2 Eftud2 Sf3b1 Sf3b1 I79_010459 I79_010459 Prpf4 Prpf4 I79_010162 I79_010162 I79_009902 I79_009902 SNRPD1 SNRPD1 Tmem79 Tmem79 CgPICR_013477 CgPICR_013477 Lsm7 Lsm7 Sf3a2 Sf3a2 Sf3a3 Sf3a3 Slu7 Slu7 Luc7l Luc7l Snrpf Snrpf Txnl4b Txnl4b Sf3b3 Sf3b3 Lsm10 Lsm10 Pde6c Pde6c I79_006299 I79_006299 Sf3b5 Sf3b5 Htatsf1 Htatsf1 Snrpa1 Snrpa1 LSM4 LSM4 I79_026256 I79_026256 I79_026056 I79_026056 I79_025983 I79_025983
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
I79_025881Pre-mRNA-processing-splicing factor 8. (318 aa)
I79_025858Spliceosome RNA helicase BAT1. (66 aa)
I79_025821Pre-mRNA-processing-splicing factor 8. (264 aa)
I79_025692tRNA guanosine-2'-O-methyltransferase TRM13-like. (87 aa)
I79_025672Spliceosome RNA helicase BAT1. (155 aa)
I79_025570Spliceosome RNA helicase Bat1. (229 aa)
I79_025509tRNA guanosine-2'-O-methyltransferase TRM13-like. (214 aa)
Cd2bp2CD2 antigen cytoplasmic tail-binding protein 2. (341 aa)
I79_022499Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (88 aa)
I79_024174U1 small nuclear ribonucleoprotein A. (104 aa)
I79_022489Uncharacterized protein. (221 aa)
Prpf40bPre-mRNA-processing factor 40-like B. (389 aa)
I79_022290U2 small nuclear ribonucleoprotein B. (113 aa)
PpihPeptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (134 aa)
Larp7La-related protein 7. (217 aa)
I79_021114Pre-mRNA-processing factor 6. (535 aa)
CgPICR_008498Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
I79_020116Coiled-coil domain-containing protein 84. (95 aa)
CenatacCoiled-coil domain-containing protein 84. (168 aa)
Ddx23Putative ATP-dependent RNA helicase DDX23. (819 aa)
Mepce7SK snRNA methylphosphate capping enzyme. (473 aa)
I79_018866U7 snRNA-associated Sm-like protein LSm10. (73 aa)
Phf5aPHD finger-like domain-containing protein 5A. (168 aa)
I79_018302Pre-mRNA-splicing factor SLU7. (100 aa)
I79_018082Brefeldin A-inhibited guanine nucleotide-exchange protein 1. (142 aa)
Sart1U4/U6.U5 tri-snRNP-associated protein 1. (1215 aa)
I79_017249Small nuclear ribonucleoprotein-associated protein. (232 aa)
Snrnp70U1 small nuclear ribonucleoprotein 70 kDa. (445 aa)
Ddx39bSpliceosome RNA helicase BAT1. (288 aa)
Snrpb2U2 small nuclear ribonucleoprotein B. (180 aa)
Snrpd3Small nuclear ribonucleoprotein Sm D3. (84 aa)
I79_015729Small nuclear ribonucleoprotein G; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. (82 aa)
I79_015143Small nuclear ribonucleoprotein G; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. (76 aa)
Arfgef1Brefeldin A-inhibited guanine nucleotide-exchange protein 1. (255 aa)
I79_024092Pre-mRNA-processing-splicing factor 8. (189 aa)
Prpf8Pre-mRNA-processing-splicing factor 8. (365 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (103 aa)
I79_024025NHP2-like protein 1. (73 aa)
I79_023508PHD finger-like domain-containing protein 5A. (180 aa)
Prpf18Pre-mRNA-splicing factor 18-like protein. (342 aa)
I79_001965La-related protein 7. (146 aa)
CgPICR_018104Small nuclear ribonucleoprotein E; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. May indirectly play a role in hair development. (92 aa)
I79_003075Small nuclear ribonucleoprotein G. (51 aa)
Sf3b6Pre-mRNA branch site protein p14. (125 aa)
Snrnp200U5 small nuclear ribonucleoprotein 200 kDa helicase. (1377 aa)
I79_003933Zinc finger protein 608. (1193 aa)
I79_004404U6 snRNA-associated Sm-like protein LSm7. (130 aa)
Prpf3U4/U6 small nuclear ribonucleoprotein Prp3. (683 aa)
SnrpbSmall nuclear ribonucleoprotein-associated protein. (223 aa)
I79_014984Squamous cell carcinoma antigen recognized by T-cells 3. (803 aa)
CgPICR_006774Pre-mRNA-splicing factor SLU7. (100 aa)
I79_014011Thioredoxin-like protein 4A. (91 aa)
SnrpeSmall nuclear ribonucleoprotein E; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. May indirectly play a role in hair development. (92 aa)
Usp39U4/U6.U5 tri-snRNP-associated protein 2. (564 aa)
SNRPD2Small nuclear ribonucleoprotein Sm D2; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. (108 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (75 aa)
I79_012406U1 small nuclear ribonucleoprotein A. (291 aa)
LSM5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (62 aa)
Eftud2116 kDa U5 small nuclear ribonucleoprotein component. (972 aa)
Sf3b1Splicing factor 3B subunit 1-like protein. (1304 aa)
I79_010459Carboxylic ester hydrolase; Belongs to the type-B carboxylesterase/lipase family. (411 aa)
Prpf4U4/U6 small nuclear ribonucleoprotein Prp4. (521 aa)
I79_010162Small nuclear ribonucleoprotein G; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. (76 aa)
I79_009902Pre-mRNA-processing factor 6. (368 aa)
SNRPD1Small nuclear ribonucleoprotein Sm D1; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. May act as a charged protein scaffold to promote snRNP assembly or strengthen snRNP-snRNP interactions through non-specific electrostatic contacts with RNA. (119 aa)
Tmem79Transmembrane protein 79. (395 aa)
CgPICR_013477Small nuclear ribonucleoprotein G; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. (76 aa)
Lsm7U6 snRNA-associated Sm-like protein LSm7. (104 aa)
Sf3a2Splicing factor 3A subunit 2. (520 aa)
Sf3a3Splicing factor 3A subunit 3. (501 aa)
Slu7Pre-mRNA-splicing factor SLU7. (564 aa)
Luc7lPutative RNA-binding protein Luc7-like 1. (318 aa)
SnrpfSmall nuclear ribonucleoprotein F. (67 aa)
Txnl4bThioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (149 aa)
Sf3b3Splicing factor 3B subunit 3. (1217 aa)
Lsm10U7 snRNA-associated Sm-like protein LSm10. (122 aa)
Pde6cPhosphodiesterase. (977 aa)
I79_006299Splicing factor 3B subunit 5. (79 aa)
Sf3b5Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
Htatsf1HIV Tat-specific factor 1-like. (528 aa)
Snrpa1U2 small nuclear ribonucleoprotein A. (95 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (124 aa)
I79_026256Spliceosome RNA helicase Bat1. (103 aa)
I79_026056Pre-mRNA-processing-splicing factor 8. (184 aa)
I79_025983Pre-mRNA-processing-splicing factor 8. (197 aa)
Your Current Organism:
Cricetulus griseus
NCBI taxonomy Id: 10029
Other names: C. griseus, CHO cell lines, Chinese hamster, Chinese hamsters, Cricetulus aureus, Cricetulus barabensis griseus
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