(24 nodes) Lysosomal lumen network (Cricetulus griseus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Gyg1	Glycogenin-1. (377 aa)
	Rnaset2	Ribonuclease T2; Belongs to the RNase T2 family. (259 aa)
	Pdgfrb	Beta-type platelet-derived growth factor receptor. (528 aa)
	I79_020466	Neuron-specific protein family member 2. (123 aa)
	Scarb2	Lysosome membrane protein 2; Belongs to the CD36 family. (438 aa)
	I79_022887	Protein FAM75A4. (726 aa)
	I79_016257	Lysosome-associated membrane glycoprotein 2. (323 aa)
	Plbd2	Phospholipase B-like; Putative phospholipase. (585 aa)
	I79_013660	Beta-type platelet-derived growth factor receptor. (454 aa)
	I79_012526	FAM75-like protein C9orf79. (583 aa)
	I79_012522	FAM75-like protein C9orf79. (760 aa)
	Pld3	Phospholipase D3-like protein. (488 aa)
	Vcan	Uncharacterized protein. (607 aa)
	Kera	Keratocan. (156 aa)
	I79_010173	Cubilin. (1951 aa)
	Gba	Glucosylceramidase. (515 aa)
	Ncan	Neurocan core protein. (1234 aa)
	I79_003363	Zona pellucida sperm-binding protein 3 receptor. (240 aa)
	H671_5g14837	Tumor necrosis factor ligand superfamily member 6-like isoform 1; Belongs to the tumor necrosis factor family. (192 aa)
	Acp2	Lysosomal acid phosphatase; Belongs to the histidine acid phosphatase family. (423 aa)
	Nsg1	Neuron-specific protein family member 1. (185 aa)
	Epdr1	Mammalian ependymin-related protein 1. (241 aa)
	Galns	N-acetylgalactosamine-6-sulfatase. (483 aa)
	Neu1	Sialidase-1. (356 aa)

Your Current Organism:

Cricetulus griseus

NCBI taxonomy Id: 10029
Other names: C. griseus, CHO cell lines, Chinese hamster, Chinese hamsters, Cricetulus aureus, Cricetulus barabensis griseus

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Galns	Neu1	G3GRS9	G3HZE3	N-acetylgalactosamine-6-sulfatase.	Sialidase-1.	0.435
Gba	I79_016257	G3HC47	G3HYW4	Glucosylceramidase.	Lysosome-associated membrane glycoprotein 2.	0.448
Gba	Scarb2	G3HC47	G3ID21	Glucosylceramidase.	Lysosome membrane protein 2; Belongs to the CD36 family.	0.693
I79_013660	Pdgfrb	G3HS34	G3HS35	Beta-type platelet-derived growth factor receptor.	Beta-type platelet-derived growth factor receptor.	0.892
I79_016257	Gba	G3HYW4	G3HC47	Lysosome-associated membrane glycoprotein 2.	Glucosylceramidase.	0.448
Ncan	Vcan	G3H471	G3HKI0	Neurocan core protein.	Uncharacterized protein.	0.690
Neu1	Galns	G3HZE3	G3GRS9	Sialidase-1.	N-acetylgalactosamine-6-sulfatase.	0.435
Pdgfrb	I79_013660	G3HS35	G3HS34	Beta-type platelet-derived growth factor receptor.	Beta-type platelet-derived growth factor receptor.	0.892
Plbd2	Rnaset2	G3I6T1	G3I4D4	Phospholipase B-like; Putative phospholipase.	Ribonuclease T2; Belongs to the RNase T2 family.	0.573
Rnaset2	Plbd2	G3I4D4	G3I6T1	Ribonuclease T2; Belongs to the RNase T2 family.	Phospholipase B-like; Putative phospholipase.	0.573
Scarb2	Gba	G3ID21	G3HC47	Lysosome membrane protein 2; Belongs to the CD36 family.	Glucosylceramidase.	0.693
Vcan	Ncan	G3HKI0	G3H471	Uncharacterized protein.	Neurocan core protein.	0.690