STRINGSTRING
I79_017249 I79_017249 Sf3a1 Sf3a1 Sf3a2 Sf3a2 Lsm7 Lsm7 I79_012765 I79_012765 U2af2 U2af2 Snrnp70 Snrnp70 I79_004404 I79_004404 Snrpb Snrpb
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
I79_017249Small nuclear ribonucleoprotein-associated protein. (232 aa)
Sf3a1Splicing factor 3A subunit 1 isoform 1. (793 aa)
Sf3a2Splicing factor 3A subunit 2. (520 aa)
Lsm7U6 snRNA-associated Sm-like protein LSm7. (104 aa)
I79_012765U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (469 aa)
U2af2U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (422 aa)
Snrnp70U1 small nuclear ribonucleoprotein 70 kDa. (445 aa)
I79_004404U6 snRNA-associated Sm-like protein LSm7. (130 aa)
SnrpbSmall nuclear ribonucleoprotein-associated protein. (223 aa)
Your Current Organism:
Cricetulus griseus
NCBI taxonomy Id: 10029
Other names: C. griseus, CHO cell lines, Chinese hamster, Chinese hamsters, Cricetulus aureus, Cricetulus barabensis griseus
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