STRINGSTRING
Snrpf Snrpf Srsf1 Srsf1 Mthfsd Mthfsd LSM3 LSM3 Syncrip Syncrip I79_000985 I79_000985 Magoh Magoh Crnkl1 Crnkl1 Alyref Alyref Cdc40 Cdc40 Dhx35 Dhx35 I79_003071 I79_003071 I79_003075 I79_003075 I79_003378 I79_003378 Snrnp200 Snrnp200 Ddx41 Ddx41 Hnrnpa3 Hnrnpa3 Zcchc8 Zcchc8 Hnrnpa2b1 Hnrnpa2b1 Rbm8a Rbm8a I79_004582 I79_004582 Snrpb Snrpb Snrpa1 Snrpa1 Plrg1 Plrg1 Aqr Aqr Snw1 Snw1 I79_005818 I79_005818 I79_006752 I79_006752 H671_3g9147 H671_3g9147 I79_007209 I79_007209 I79_007210 I79_007210 I79_007377 I79_007377 Sf3b3 Sf3b3 Dhx38 Dhx38 I79_007488 I79_007488 Raly Raly I79_007979 I79_007979 I79_008082 I79_008082 Ddx5 Ddx5 Wdr83 Wdr83 Slu7 Slu7 I79_008764 I79_008764 Sf3a3 Sf3a3 Ess2 Ess2 I79_009163 I79_009163 I79_009164 I79_009164 Sf3a2 Sf3a2 Bcas2 Bcas2 CgPICR_013477 CgPICR_013477 SNRPD1 SNRPD1 I79_009902 I79_009902 I79_010162 I79_010162 I79_010238 I79_010238 Isy1 Isy1 Hnrnpr Hnrnpr I79_010589 I79_010589 Wdr25 Wdr25 I79_010702 I79_010702 I79_011000 I79_011000 Srrm1 Srrm1 Ppil1 Ppil1 Eftud2 Eftud2 I79_012084 I79_012084 Ppie Ppie I79_012442 I79_012442 I79_012445 I79_012445 I79_012459 I79_012459 H671_xg20125 H671_xg20125 I79_012989 I79_012989 H671_1g3186 H671_1g3186 I79_013569 I79_013569 I79_013570 I79_013570 I79_013592 I79_013592 I79_013671 I79_013671 Cactin Cactin Cwc15 Cwc15 I79_014008 I79_014008 Eif4a3 Eif4a3 I79_014275 I79_014275 CgPICR_006774 CgPICR_006774 I79_014603 I79_014603 Ppil3 Ppil3 I79_015143 I79_015143 H671_5g13839 H671_5g13839 I79_015166 I79_015166 Hnrnpc Hnrnpc Xab2 Xab2 I79_015703 I79_015703 Ppwd1 Ppwd1 I79_015729 I79_015729 Snrpd3 Snrpd3 Snrpb2 Snrpb2 CgPICR_014751 CgPICR_014751 CgPICR_014750 CgPICR_014750 I79_017595 I79_017595 Sart1 Sart1 Bud31 Bud31 I79_017997 I79_017997 I79_018020 I79_018020 I79_018302 I79_018302 I79_018336 I79_018336 Hnrnpm Hnrnpm Ddx23 Ddx23 I79_019376 I79_019376 Pabpc1 Pabpc1 I79_020247 I79_020247 I79_021114 I79_021114 I79_022116 I79_022116 Efl1 Efl1 I79_022290 I79_022290 Rsrp1 Rsrp1 I79_022422 I79_022422 Srrm2 Srrm2 Hnrnpa1 Hnrnpa1 I79_023931 I79_023931 Prpf8 Prpf8 I79_024092 I79_024092 I79_024690 I79_024690 I79_024961 I79_024961 I79_024962 I79_024962 I79_025821 I79_025821 I79_025881 I79_025881 I79_025952 I79_025952 I79_025978 I79_025978 I79_025983 I79_025983 I79_026056 I79_026056 I79_026076 I79_026076 I79_026082 I79_026082 I79_026098 I79_026098 I79_026147 I79_026147
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SnrpfSmall nuclear ribonucleoprotein F. (67 aa)
Srsf1Splicing factor, arginine/serine-rich 1, transcript variant 1. (248 aa)
MthfsdMethenyltetrahydrofolate synthetase domain-containing protein. (271 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (103 aa)
SyncripHeterogeneous nuclear ribonucleoprotein Q. (562 aa)
I79_000985Heterogeneous nuclear ribonucleoprotein A3. (146 aa)
MagohProtein mago nashi-like. (146 aa)
Crnkl1Crooked neck-like protein 1. (690 aa)
AlyrefTHO complex subunit 4. (187 aa)
Cdc40Pre-mRNA-processing factor 17. (579 aa)
Dhx35Putative ATP-dependent RNA helicase DHX35. (703 aa)
I79_003071Serine/threonine-protein kinase PRP4-like. (749 aa)
I79_003075Small nuclear ribonucleoprotein G. (51 aa)
I79_003378Pleiotropic regulator 1. (120 aa)
Snrnp200U5 small nuclear ribonucleoprotein 200 kDa helicase. (1377 aa)
Ddx41Putative ATP-dependent RNA helicase DDX41. (622 aa)
Hnrnpa3Heterogeneous nuclear ribonucleoprotein A3. (261 aa)
Zcchc8Zinc finger CCHC domain-containing protein 8. (708 aa)
Hnrnpa2b1Heterogeneous nuclear ribonucleoproteins A2/B1. (282 aa)
Rbm8aRNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (171 aa)
I79_004582Polyadenylate-binding protein 1. (63 aa)
SnrpbSmall nuclear ribonucleoprotein-associated protein. (223 aa)
Snrpa1U2 small nuclear ribonucleoprotein A. (95 aa)
Plrg1Pleiotropic regulator 1. (384 aa)
AqrRNA helicase aquarius; Intron-binding spliceosomal protein required to link pre-mRNA splicing and snoRNP (small nucleolar ribonucleoprotein) biogenesis. Plays a key role in position-dependent assembly of intron-encoded box C/D small snoRNP, splicing being required for snoRNP assembly. May act by helping the folding of the snoRNA sequence. Binds to intron of pre- mRNAs in a sequence-independent manner, contacting the region between snoRNA and the branchpoint of introns (40 nucleotides upstream of the branchpoint) during the late stages of splicing. (1472 aa)
Snw1SNW domain-containing protein 1. (536 aa)
I79_005818Polyadenylate-binding protein 1. (147 aa)
I79_006752Heterogeneous nuclear ribonucleoprotein A1. (98 aa)
H671_3g9147Heterogeneous nuclear ribonucleoprotein G-like 1-like protein. (388 aa)
I79_007209Cell division cycle 5-related protein. (188 aa)
I79_007210Cell division cycle 5-related protein. (89 aa)
I79_007377Pre-mRNA-splicing factor CWC22-like. (903 aa)
Sf3b3Splicing factor 3B subunit 3. (1217 aa)
Dhx38Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16. (1227 aa)
I79_007488Polyadenylate-binding protein 1. (127 aa)
RalyRNA-binding protein Raly-like protein. (318 aa)
I79_007979Heterogeneous nuclear ribonucleoproteins C1/C2. (228 aa)
I79_008082Cell division cycle 5-related protein. (585 aa)
Ddx5Putative ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family. (615 aa)
Wdr83Mitogen-activated protein kinase organizer 1. (315 aa)
Slu7Pre-mRNA-splicing factor SLU7. (564 aa)
I79_008764Heterogeneous nuclear ribonucleoprotein C-like 1. (56 aa)
Sf3a3Splicing factor 3A subunit 3. (501 aa)
Ess2Protein DGCR14-like protein. (476 aa)
I79_009163G patch domain-containing protein 1. (269 aa)
I79_009164G patch domain-containing protein 1. (229 aa)
Sf3a2Splicing factor 3A subunit 2. (520 aa)
Bcas2Pre-mRNA-splicing factor SPF27. (68 aa)
CgPICR_013477Small nuclear ribonucleoprotein G; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. (76 aa)
SNRPD1Small nuclear ribonucleoprotein Sm D1; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. May act as a charged protein scaffold to promote snRNP assembly or strengthen snRNP-snRNP interactions through non-specific electrostatic contacts with RNA. (119 aa)
I79_009902Pre-mRNA-processing factor 6. (368 aa)
I79_010162Small nuclear ribonucleoprotein G; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. (76 aa)
I79_010238Superkiller viralicidic activity 2-like 2. (851 aa)
Isy1Pre-mRNA-splicing factor ISY1-like. (285 aa)
HnrnprHeterogeneous nuclear ribonucleoprotein R. (633 aa)
I79_010589Heterogeneous nuclear ribonucleoprotein C-like 1. (70 aa)
Wdr25WD repeat-containing protein 25. (526 aa)
I79_010702Heterogeneous nuclear ribonucleoprotein M. (216 aa)
I79_011000Uncharacterized protein. (101 aa)
Srrm1Serine/arginine repetitive matrix protein 1. (178 aa)
Ppil1Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (166 aa)
Eftud2116 kDa U5 small nuclear ribonucleoprotein component. (972 aa)
I79_012084Serine/arginine repetitive matrix protein 1. (866 aa)
PpiePeptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily. (301 aa)
I79_012442Pleiotropic regulator 1. (161 aa)
I79_012445Cell division cycle 5-related protein. (151 aa)
I79_012459Splicing factor U2AF 35 kDa subunit. (98 aa)
H671_xg20125Heterogeneous nuclear ribonucleoprotein A1-like protein 2. (151 aa)
I79_012989Heterogeneous nuclear ribonucleoprotein M. (92 aa)
H671_1g3186Pre-mRNA-splicing factor SPF27-like protein. (144 aa)
I79_013569Putative heterogeneous nuclear ribonucleoprotein A1-like protein 3. (174 aa)
I79_013570Heterogeneous nuclear ribonucleoprotein A3. (105 aa)
I79_013592Heterogeneous nuclear ribonucleoprotein M. (199 aa)
I79_013671Pre-mRNA-splicing factor RBM22. (241 aa)
CactinUncharacterized protein C19orf29-like. (425 aa)
Cwc15Protein CWC15-like. (229 aa)
I79_014008Pleiotropic regulator 1. (149 aa)
Eif4a3Eukaryotic initiation factor 4A-III. (279 aa)
I79_014275RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (179 aa)
CgPICR_006774Pre-mRNA-splicing factor SLU7. (100 aa)
I79_014603Polyadenylate-binding protein 1. (101 aa)
Ppil3Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (160 aa)
I79_015143Small nuclear ribonucleoprotein G; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. (76 aa)
H671_5g13839Cell division cycle 5-related protein. (242 aa)
I79_015166Cell division cycle 5-related protein. (90 aa)
HnrnpcHeterogeneous nuclear ribonucleoprotein C-like 1-like isoform 5. (307 aa)
Xab2Pre-mRNA-splicing factor SYF1. (855 aa)
I79_015703Peptidyl-prolyl cis-trans isomerase SDCCAG10. (471 aa)
Ppwd1Peptidylprolyl isomerase domain and WD repeat-containing protein 1. (646 aa)
I79_015729Small nuclear ribonucleoprotein G; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. (82 aa)
Snrpd3Small nuclear ribonucleoprotein Sm D3. (84 aa)
Snrpb2U2 small nuclear ribonucleoprotein B. (180 aa)
CgPICR_014751Eukaryotic initiation factor 4A-III. (250 aa)
CgPICR_014750Eukaryotic initiation factor 4A-III. (115 aa)
I79_017595Splicing factor 3B subunit 2. (935 aa)
Sart1U4/U6.U5 tri-snRNP-associated protein 1. (1215 aa)
Bud31Protein BUD31-like. (144 aa)
I79_017997Polyadenylate-binding protein 1. (101 aa)
I79_018020Mitogen-activated protein kinase organizer 1. (141 aa)
I79_018302Pre-mRNA-splicing factor SLU7. (100 aa)
I79_018336Pleiotropic regulator 1. (99 aa)
HnrnpmHeterogeneous nuclear ribonucleoprotein M. (574 aa)
Ddx23Putative ATP-dependent RNA helicase DDX23. (819 aa)
I79_019376Heterogeneous nuclear ribonucleoprotein M. (133 aa)
Pabpc1Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (565 aa)
I79_020247Heterogeneous nuclear ribonucleoprotein M. (104 aa)
I79_021114Pre-mRNA-processing factor 6. (535 aa)
I79_022116Heterogeneous nuclear ribonucleoprotein A3. (122 aa)
Efl1Elongation factor Tu GTP-binding domain-containing protein 1. (759 aa)
I79_022290U2 small nuclear ribonucleoprotein B. (113 aa)
Rsrp1Pre-mRNA-splicing factor SYF2. (213 aa)
I79_022422Heterogeneous nuclear ribonucleoprotein A1. (166 aa)
Srrm2Serine/arginine repetitive matrix protein 2. (2791 aa)
Hnrnpa1Putative heterogeneous nuclear ribonucleoprotein A1-like protein 3. (340 aa)
I79_023931Heterogeneous nuclear ribonucleoprotein A3. (175 aa)
Prpf8Pre-mRNA-processing-splicing factor 8. (365 aa)
I79_024092Pre-mRNA-processing-splicing factor 8. (189 aa)
I79_024690Heterogeneous nuclear ribonucleoprotein G. (155 aa)
I79_024961Uncharacterized protein C19orf29-like. (328 aa)
I79_024962Uncharacterized protein C19orf29-like. (171 aa)
I79_025821Pre-mRNA-processing-splicing factor 8. (264 aa)
I79_025881Pre-mRNA-processing-splicing factor 8. (318 aa)
I79_025952ATP-dependent RNA helicase DHX8. (113 aa)
I79_025978ATP-dependent RNA helicase DHX8. (169 aa)
I79_025983Pre-mRNA-processing-splicing factor 8. (197 aa)
I79_026056Pre-mRNA-processing-splicing factor 8. (184 aa)
I79_026076ATP-dependent RNA helicase DHX8. (79 aa)
I79_026082ATP-dependent RNA helicase DHX8. (59 aa)
I79_026098ATP-dependent RNA helicase DHX8. (79 aa)
I79_026147ATP-dependent RNA helicase DHX8. (118 aa)
Your Current Organism:
Cricetulus griseus
NCBI taxonomy Id: 10029
Other names: C. griseus, CHO cell lines, Chinese hamster, Chinese hamsters, Cricetulus aureus, Cricetulus barabensis griseus
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