(124 nodes) 9+0 non-motile cilium network (Cricetulus griseus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Cetn3	Centrin-3. (167 aa)
	I79_000133	Myosin-Va; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1737 aa)
	Rab27a	Ras-related protein Rab-27A. (221 aa)
	Ush1g	Usher syndrome type-1G protein-like. (461 aa)
	I79_001254	Myosin-IIIB; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (686 aa)
	Myo3b	Myosin-IIIB; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (237 aa)
	I79_001256	Myosin-IIIB; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (198 aa)
	I79_001274	Rap guanine nucleotide exchange factor 4. (761 aa)
	I79_001286	Spermatogenesis-associated protein 7-like. (336 aa)
	Tulp3	Tubby-like protein; Belongs to the TUB family. (414 aa)
	Phyh	Phytanoyl-CoA dioxygenase, peroxisomal. (338 aa)
	Pcare	Uncharacterized protein C2orf71-like. (1284 aa)
	Lyar	Cell growth-regulating nucleolar protein. (382 aa)
	Pdc	Phosducin. (176 aa)
	Pde6g	Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit gamma-like protein. (87 aa)
	I79_002728	Guanylyl cyclase GC-E. (519 aa)
	Tmem237	Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 4 protein-like. (200 aa)
	Iftap	Uncharacterized protein C11orf74-like. (234 aa)
	Smo	Smoothened-like; Belongs to the G-protein coupled receptor Fz/Smo family. (984 aa)
	I79_003454	Proto-oncogene tyrosine-protein kinase MER. (265 aa)
	Mertk	Proto-oncogene tyrosine-protein kinase MER. (305 aa)
	Rp1l1	Retinitis pigmentosa 1-like 1 protein. (1865 aa)
	Rpgrip1l	Protein fantom. (1265 aa)
	Map1a	Microtubule-associated protein 1A. (2585 aa)
	Cnga3	Cyclic nucleotide-gated cation channel alpha-3. (1314 aa)
	Kif3a	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (646 aa)
	Rd3	Protein RD3. (195 aa)
	I79_005248	Retinal cone rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit gamma. (149 aa)
	I79_005582	Serine/threonine-protein phosphatase. (402 aa)
	Lca5	Lebercilin. (713 aa)
	Ift57	Intraflagellar transport protein 57-like. (296 aa)
	Gnat1	Guanine nucleotide-binding protein G(T) subunit alpha-1. (302 aa)
	I79_006693	Intraflagellar transport protein 88-like. (533 aa)
	Cfap410	Uncharacterized protein C21orf2. (212 aa)
	Iqcb1	IQ calmodulin-binding motif-containing protein 1. (597 aa)
	Cep250	Centrosome-associated protein CEP250. (2090 aa)
	I79_007783	Spermatogenesis-associated protein 7-like. (290 aa)
	Ttc8	Tetratricopeptide repeat protein 8. (505 aa)
	Ift140	Intraflagellar transport protein 140-like. (1462 aa)
	I79_008252	Guanylate cyclase activator 2B. (104 aa)
	I79_008481	Intraflagellar transport protein 57-like. (162 aa)
	Cerkl	Ceramide kinase-like protein. (157 aa)
	I79_008650	Protein FAM161A. (561 aa)
	Fam161a	Protein FAM161A. (88 aa)
	Pde6b	Phosphodiesterase. (829 aa)
	Ift43	Tubulin polyglutamylase TTLL5. (1247 aa)
	I79_010330	Hepatocyte nuclear factor 1-alpha. (668 aa)
	I79_010454	Centrosomal protein of 290 kDa. (2172 aa)
	Map1b	Microtubule-associated protein 1B. (2371 aa)
	CgPICR_014540	Centrin-2-like protein. (163 aa)
	I79_010878	Tubulin polyglutamylase TTLL6. (460 aa)
	Adgrv1	G-protein coupled receptor 98. (128 aa)
	I79_011453	G-protein coupled receptor 98. (5280 aa)
	I79_000100	Usherin. (2093 aa)
	Magi2	Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 2. (483 aa)
	I79_011515	Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 2. (343 aa)
	I79_011654	Protocadherin-21. (820 aa)
	Crb1	Crumbs-like 1. (989 aa)
	I79_011762	Crumbs-like 1. (107 aa)
	I79_011954	Tubulin polyglutamylase TTLL7. (749 aa)
	Pcdh15	Protocadherin-15. (1827 aa)
	I79_012418	Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 2. (120 aa)
	I79_012741	Kinesin-associated protein 3. (610 aa)
	I79_012775	Centrin-1. (76 aa)
	Topors	E3 ubiquitin-protein ligase Topors. (964 aa)
	Guca1a	Guanylyl cyclase-activating protein 1. (201 aa)
	Guca1b	Guanylyl cyclase-activating protein 2. (201 aa)
	Prph2	Peripherin-2. (347 aa)
	Tbcc	Tubulin-specific chaperone C. (238 aa)
	Pex6	Peroxisome assembly factor 2; Belongs to the AAA ATPase family. (570 aa)
	I79_013653	Phosphodiesterase. (801 aa)
	I79_013929	Serine/threonine-protein kinase MAK. (349 aa)
	I79_013931	Serine/threonine-protein kinase MAK. (143 aa)
	Opn1mw	Green-sensitive opsin. (359 aa)
	I79_013982	Oxygen-regulated protein 1. (657 aa)
	Ift122	Intraflagellar transport protein 122-like. (292 aa)
	Rho	Rhodopsin. (348 aa)
	Nup42	Nucleoporin-like 2. (224 aa)
	Ttll4	Tubulin polyglutamylase TTLL4. (406 aa)
	I79_015426	X-linked retinitis pigmentosa GTPase regulator-interacting protein 1. (1122 aa)
	I79_015961	Serologically defined colon cancer antigen 8. (184 aa)
	I79_016411	G-protein coupled receptor 98. (86 aa)
	Tulp1	Tubby-like protein; Belongs to the TUB family. (518 aa)
	Rom1	Rod outer segment membrane protein 1. (351 aa)
	I79_016812	Nephrocystin-4. (828 aa)
	Ift52	Intraflagellar transport protein 52-like. (425 aa)
	Pkhd1	Fibrocystin. (176 aa)
	Eif1b	Rab effector MyRIP. (919 aa)
	I79_017230	Fibrocystin. (1423 aa)
	I79_017234	Sodium/potassium/calcium exchanger 4; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family. (1206 aa)
	Gnb1	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1. (340 aa)
	Cngb1	Cyclic nucleotide-gated cation channel beta-1. (141 aa)
	I79_018008	Cyclic nucleotide-gated cation channel beta-1. (897 aa)
	Kif17	Kinesin-like protein KIF17; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (168 aa)
	Inha	Inhibin alpha chain; Inhibins and activins inhibit and activate, respectively, the secretion of follitropin by the pituitary gland. Inhibins/activins are involved in regulating a number of diverse functions such as hypothalamic and pituitary hormone secretion, gonadal hormone secretion, germ cell development and maturation, erythroid differentiation, insulin secretion, nerve cell survival, embryonic axial development or bone growth, depending on their subunit composition; Belongs to the TGF-beta family. (367 aa)
	I79_019338	Short-chain dehydrogenase/reductase 3; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (285 aa)
	Arl3	ADP-ribosylation factor-like protein 3; Belongs to the small GTPase superfamily. Arf family. (182 aa)
	I79_019385	Guanine nucleotide-binding protein G(T) subunit alpha-2. (69 aa)
	Gnat2	Guanine nucleotide-binding protein G(T) subunit alpha-2. (157 aa)
	Myo7a	Myosin-VIIa; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (2184 aa)
	Grk1	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily. (564 aa)
	I79_019695	Fibrocystin. (1076 aa)
	I79_020548	Receptor-type tyrosine-protein phosphatase kappa. (858 aa)
	Ift80	Intraflagellar transport protein 80-like. (366 aa)
	Rcbtb1	RCC1 and BTB domain-containing protein 1. (531 aa)
	I79_021078	Retinal guanylyl cyclase 2. (489 aa)
	Ptgs1	Prostaglandin G/H synthase 1. (589 aa)
	I79_021497	S-arrestin. (327 aa)
	I79_021606	Alpha-protein kinase 1. (404 aa)
	I79_022317	WD repeat-containing protein 19. (899 aa)
	I79_022455	Receptor-type tyrosine-protein phosphatase kappa. (375 aa)
	Cetn2	Centrin-2. (172 aa)
	I79_023732	WD repeat-containing protein 19. (196 aa)
	Stx3	Syntaxin-3; Belongs to the syntaxin family. (173 aa)
	I79_024531	Retinal-specific ATP-binding cassette transporter. (273 aa)
	I79_024588	Centrin-1. (172 aa)
	I79_025121	Retinal-specific ATP-binding cassette transporter. (217 aa)
	I79_025259	Serine/threonine-protein phosphatase with EF-hands 2. (99 aa)
	I79_025260	Serine/threonine-protein phosphatase with EF-hands 2. (66 aa)
	I79_025367	Centrin-1. (172 aa)
	I79_025368	Serine/threonine-protein phosphatase. (399 aa)
	I79_025697	Intraflagellar transport protein 80-like. (113 aa)
	Guca2b	Guanylate cyclase activator 2B. (107 aa)
	I79_000099	Usherin. (1735 aa)

Your Current Organism:

Cricetulus griseus

NCBI taxonomy Id: 10029
Other names: C. griseus, CHO cell lines, Chinese hamster, Chinese hamsters, Cricetulus aureus, Cricetulus barabensis griseus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Adgrv1	I79_011453	G3HL67	G3HL68	G-protein coupled receptor 98.	G-protein coupled receptor 98.	0.941
Adgrv1	Myo7a	G3HL67	G3I7G0	G-protein coupled receptor 98.	Myosin-VIIa; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.429
Adgrv1	Ttc8	G3HL67	G3HBG0	G-protein coupled receptor 98.	Tetratricopeptide repeat protein 8.	0.783
Adgrv1	Ush1g	G3HL67	G3GTG5	G-protein coupled receptor 98.	Usher syndrome type-1G protein-like.	0.419
Arl3	I79_006693	G3I757	G3H8J1	ADP-ribosylation factor-like protein 3; Belongs to the small GTPase superfamily. Arf family.	Intraflagellar transport protein 88-like.	0.626
Arl3	I79_008481	G3I757	G3HDA2	ADP-ribosylation factor-like protein 3; Belongs to the small GTPase superfamily. Arf family.	Intraflagellar transport protein 57-like.	0.430
Arl3	I79_016812	G3I757	G3I0D3	ADP-ribosylation factor-like protein 3; Belongs to the small GTPase superfamily. Arf family.	Nephrocystin-4.	0.541
Arl3	Ift122	G3I757	G3HVL8	ADP-ribosylation factor-like protein 3; Belongs to the small GTPase superfamily. Arf family.	Intraflagellar transport protein 122-like.	0.533
Arl3	Ift140	G3I757	G3HBX9	ADP-ribosylation factor-like protein 3; Belongs to the small GTPase superfamily. Arf family.	Intraflagellar transport protein 140-like.	0.456
Arl3	Ift57	G3I757	G3H7C5	ADP-ribosylation factor-like protein 3; Belongs to the small GTPase superfamily. Arf family.	Intraflagellar transport protein 57-like.	0.837
Arl3	Iqcb1	G3I757	G3HAJ2	ADP-ribosylation factor-like protein 3; Belongs to the small GTPase superfamily. Arf family.	IQ calmodulin-binding motif-containing protein 1.	0.441
Arl3	Kif17	G3I757	G3I484	ADP-ribosylation factor-like protein 3; Belongs to the small GTPase superfamily. Arf family.	Kinesin-like protein KIF17; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.697
Arl3	Kif3a	G3I757	G3H2B3	ADP-ribosylation factor-like protein 3; Belongs to the small GTPase superfamily. Arf family.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.603
Arl3	Rpgrip1l	G3I757	G3H0R2	ADP-ribosylation factor-like protein 3; Belongs to the small GTPase superfamily. Arf family.	Protein fantom.	0.501
Arl3	Tbcc	G3I757	G3HR59	ADP-ribosylation factor-like protein 3; Belongs to the small GTPase superfamily. Arf family.	Tubulin-specific chaperone C.	0.917
Cerkl	I79_011654	G3HDP6	G3HLR2	Ceramide kinase-like protein.	Protocadherin-21.	0.473
Cerkl	I79_013653	G3HDP6	G3HS25	Ceramide kinase-like protein.	Phosphodiesterase.	0.486
Cerkl	Pcare	G3HDP6	G3GW83	Ceramide kinase-like protein.	Uncharacterized protein C2orf71-like.	0.467
Cerkl	Prph2	G3HDP6	G3HR58	Ceramide kinase-like protein.	Peripherin-2.	0.406
Cetn2	Cetn3	G3II80	G3HL74	Centrin-2.	Centrin-3.	0.511