(38 nodes) F-box domain network (Cricetulus griseus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Fbxl5	F-box/LRR-repeat protein 5. (554 aa)
	Fbxw5	F-box/WD repeat-containing protein 5. (569 aa)
	I79_024845	F-box/WD repeat-containing protein 2. (180 aa)
	I79_003189	F-box only protein 28. (310 aa)
	Fbxo22	F-box only protein 22. (405 aa)
	Fbxo16	F-box only protein 16. (187 aa)
	Kdm2b	Lysine-specific demethylase 2B. (1305 aa)
	Fbxo11	F-box only protein 11. (843 aa)
	Fbxl12	F-box/LRR-repeat protein 12. (326 aa)
	Fbxo34	F-box only protein 34. (706 aa)
	Fbxw11	Serine/threonine-protein kinase 10. (1359 aa)
	I79_007441	Syntaxin-binding protein 5-like. (435 aa)
	Fbxw9	F-box/WD repeat-containing protein 9. (458 aa)
	Fbxo7	F-box only protein 7. (381 aa)
	I79_010631	F-box/LRR-repeat protein 21. (409 aa)
	Fbxl8	F-box/LRR-repeat protein 8. (374 aa)
	Fbxo8	F-box only protein 8. (319 aa)
	Kdm2a	Lysine-specific demethylase 2A. (977 aa)
	Btrc	F-box/WD repeat-containing protein 1A. (488 aa)
	Fbxo9	F-box only protein 9. (366 aa)
	Skp2	S-phase kinase-associated protein 2. (424 aa)
	Fbxo10	F-box only protein 10. (956 aa)
	I79_012524	F-box/WD repeat-containing protein 12. (377 aa)
	I79_013004	F-box/WD repeat-containing protein 7. (709 aa)
	CgPICR_017870	F-box only protein 44-like isoform 1. (255 aa)
	Fbxl18	F-box/LRR-repeat protein 18. (715 aa)
	I79_014633	F-box only protein 6. (159 aa)
	Fbxo30	F-box only protein 30. (745 aa)
	I79_016042	F-box only protein 41. (866 aa)
	Fbxl7	F-box/LRR-repeat protein 7. (444 aa)
	Fbxo24	F-box only protein 24. (589 aa)
	H671_3g9909	F-box/LRR-repeat protein 19. (593 aa)
	I79_019981	Lysine-specific demethylase 2B. (484 aa)
	Fbxo36	F-box only protein 36. (249 aa)
	I79_000037	F-box/WD repeat-containing protein 11. (481 aa)
	I79_000250	F-box only protein 31. (436 aa)
	Fbxo5	F-box only protein 5. (388 aa)
	Fbxo21	F-box only protein 21. (627 aa)

Your Current Organism:

Cricetulus griseus

NCBI taxonomy Id: 10029
Other names: C. griseus, CHO cell lines, Chinese hamster, Chinese hamsters, Cricetulus aureus, Cricetulus barabensis griseus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Btrc	Fbxo5	G3I574	G3GU27	F-box/WD repeat-containing protein 1A.	F-box only protein 5.	0.910
Btrc	Fbxw11	G3I574	G3H9P3	F-box/WD repeat-containing protein 1A.	Serine/threonine-protein kinase 10.	0.901
Btrc	I79_000037	G3I574	G3GR94	F-box/WD repeat-containing protein 1A.	F-box/WD repeat-containing protein 11.	0.639
Btrc	I79_013004	G3I574	G3HQA7	F-box/WD repeat-containing protein 1A.	F-box/WD repeat-containing protein 7.	0.559
Btrc	Skp2	G3I574	G3HJU6	F-box/WD repeat-containing protein 1A.	S-phase kinase-associated protein 2.	0.965
Fbxl12	Fbxl5	G3H6F3	G3IGJ9	F-box/LRR-repeat protein 12.	F-box/LRR-repeat protein 5.	0.584
Fbxl12	Fbxo24	G3H6F3	G3I663	F-box/LRR-repeat protein 12.	F-box only protein 24.	0.580
Fbxl12	Skp2	G3H6F3	G3HJU6	F-box/LRR-repeat protein 12.	S-phase kinase-associated protein 2.	0.464
Fbxl5	Fbxl12	G3IGJ9	G3H6F3	F-box/LRR-repeat protein 5.	F-box/LRR-repeat protein 12.	0.584
Fbxl5	Fbxo11	G3IGJ9	G3H5Q6	F-box/LRR-repeat protein 5.	F-box only protein 11.	0.410
Fbxl5	Fbxw5	G3IGJ9	G3IHB8	F-box/LRR-repeat protein 5.	F-box/WD repeat-containing protein 5.	0.466
Fbxl5	Fbxw9	G3IGJ9	G3HCV9	F-box/LRR-repeat protein 5.	F-box/WD repeat-containing protein 9.	0.560
Fbxl7	Fbxo16	G3HZA7	G3H0J4	F-box/LRR-repeat protein 7.	F-box only protein 16.	0.505
Fbxl7	Skp2	G3HZA7	G3HJU6	F-box/LRR-repeat protein 7.	S-phase kinase-associated protein 2.	0.420
Fbxo11	Fbxl5	G3H5Q6	G3IGJ9	F-box only protein 11.	F-box/LRR-repeat protein 5.	0.410
Fbxo11	Fbxo9	G3H5Q6	G3I5G9	F-box only protein 11.	F-box only protein 9.	0.904
Fbxo11	Fbxw5	G3H5Q6	G3IHB8	F-box only protein 11.	F-box/WD repeat-containing protein 5.	0.562
Fbxo11	Skp2	G3H5Q6	G3HJU6	F-box only protein 11.	S-phase kinase-associated protein 2.	0.634
Fbxo16	Fbxl7	G3H0J4	G3HZA7	F-box only protein 16.	F-box/LRR-repeat protein 7.	0.505
Fbxo24	Fbxl12	G3I663	G3H6F3	F-box only protein 24.	F-box/LRR-repeat protein 12.	0.580