(12 nodes) EGF domain network (Cricetulus griseus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	I79_013535	Fibrillin-3. (1889 aa)
	Thbs2	Thrombospondin-2. (1115 aa)
	Thbs1	Thrombospondin-1. (533 aa)
	Tmem145	Multiple epidermal growth factor-like domains 8. (2639 aa)
	Tceanc	Uncharacterized protein. (676 aa)
	I79_017864	Fibrillin-2. (2601 aa)
	Umod	Uromodulin. (618 aa)
	I79_015855	Signal peptide, CUB and EGF-like domain-containing protein 1. (773 aa)
	I79_015301	Nidogen-1. (723 aa)
	I79_013621	Signal peptide, CUB and EGF-like domain-containing protein 3. (855 aa)
	I79_013556	Fibrillin-1. (2698 aa)
	I79_013136	Stabilin-2. (1803 aa)

Your Current Organism:

Cricetulus griseus

NCBI taxonomy Id: 10029
Other names: C. griseus, CHO cell lines, Chinese hamster, Chinese hamsters, Cricetulus aureus, Cricetulus barabensis griseus

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
I79_013535	I79_013556	G3HRR4	G3HRT4	Fibrillin-3.	Fibrillin-1.	0.650
I79_013556	I79_013535	G3HRT4	G3HRR4	Fibrillin-1.	Fibrillin-3.	0.650
I79_013556	I79_017864	G3HRT4	G3I363	Fibrillin-1.	Fibrillin-2.	0.650
I79_013556	Thbs1	G3HRT4	G3HHV4	Fibrillin-1.	Thrombospondin-1.	0.530
I79_013621	I79_015855	G3HRZ6	G3HXU1	Signal peptide, CUB and EGF-like domain-containing protein 3.	Signal peptide, CUB and EGF-like domain-containing protein 1.	0.494
I79_015855	I79_013621	G3HXU1	G3HRZ6	Signal peptide, CUB and EGF-like domain-containing protein 1.	Signal peptide, CUB and EGF-like domain-containing protein 3.	0.494
I79_017864	I79_013556	G3I363	G3HRT4	Fibrillin-2.	Fibrillin-1.	0.650
Thbs1	I79_013556	G3HHV4	G3HRT4	Thrombospondin-1.	Fibrillin-1.	0.530
Thbs1	Thbs2	G3HHV4	G3HK37	Thrombospondin-1.	Thrombospondin-2.	0.948
Thbs2	Thbs1	G3HK37	G3HHV4	Thrombospondin-2.	Thrombospondin-1.	0.948