(15 nodes) ABC transporter A network (Cricetulus griseus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	I79_021659	ATP-binding cassette sub-family A member 3. (115 aa)
	I79_025342	ATP-binding cassette sub-family A member 3. (99 aa)
	I79_025121	Retinal-specific ATP-binding cassette transporter. (217 aa)
	I79_024998	ATP-binding cassette sub-family A member 3. (345 aa)
	I79_024531	Retinal-specific ATP-binding cassette transporter. (273 aa)
	Abca1	ATP-binding cassette sub-family A member 1. (2261 aa)
	I79_006548	ATP-binding cassette sub-family A member 5. (2106 aa)
	I79_006549	ATP-binding cassette sub-family A member 8-A. (983 aa)
	Abca7	ATP-binding cassette sub-family A member 7. (408 aa)
	I79_015031	ATP-binding cassette sub-family A member 12. (892 aa)
	Abca3	ATP-binding cassette sub-family A member 3. (1704 aa)
	Ccnf	G2/mitotic-specific cyclin-F; Belongs to the cyclin family. (1921 aa)
	I79_020155	ATP-binding cassette sub-family A member 13. (655 aa)
	I79_020156	ATP-binding cassette sub-family A member 13. (589 aa)
	I79_021658	ATP-binding cassette sub-family A member 3. (435 aa)

Your Current Organism:

Cricetulus griseus

NCBI taxonomy Id: 10029
Other names: C. griseus, CHO cell lines, Chinese hamster, Chinese hamsters, Cricetulus aureus, Cricetulus barabensis griseus

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Abca3	I79_021659	G3I2S8	G3ID86	ATP-binding cassette sub-family A member 3.	ATP-binding cassette sub-family A member 3.	0.900
I79_021659	Abca3	G3ID86	G3I2S8	ATP-binding cassette sub-family A member 3.	ATP-binding cassette sub-family A member 3.	0.900
I79_021659	I79_024531	G3ID86	G3IKX6	ATP-binding cassette sub-family A member 3.	Retinal-specific ATP-binding cassette transporter.	0.424
I79_024531	I79_021659	G3IKX6	G3ID86	Retinal-specific ATP-binding cassette transporter.	ATP-binding cassette sub-family A member 3.	0.424
I79_024531	I79_025121	G3IKX6	G3IMI2	Retinal-specific ATP-binding cassette transporter.	Retinal-specific ATP-binding cassette transporter.	0.565
I79_024531	I79_025342	G3IKX6	G3IN29	Retinal-specific ATP-binding cassette transporter.	ATP-binding cassette sub-family A member 3.	0.447
I79_025121	I79_024531	G3IMI2	G3IKX6	Retinal-specific ATP-binding cassette transporter.	Retinal-specific ATP-binding cassette transporter.	0.565
I79_025342	I79_024531	G3IN29	G3IKX6	ATP-binding cassette sub-family A member 3.	Retinal-specific ATP-binding cassette transporter.	0.447