(13 nodes) GOLD domain superfamily network (Cricetulus griseus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Tmed3	Transmembrane emp24 domain-containing protein 3. (220 aa)
	Sec14l1	SEC14-like protein 1. (716 aa)
	I79_005792	Protein TMED8. (239 aa)
	Tmed1	Transmembrane emp24 domain-containing protein 1. (226 aa)
	Tmed5	Transmembrane emp24 domain-containing protein 5. (230 aa)
	Tmed7	Transmembrane emp24 domain-containing protein 7. (136 aa)
	Acbd3	Golgi resident protein GCP60. (377 aa)
	Fyco1	FYVE and coiled-coil domain-containing protein 1. (1488 aa)
	Tmed2	Transmembrane emp24 domain-containing protein 2. (116 aa)
	I79_015952	SEC14-like protein 5. (712 aa)
	Ccdc157	Coiled-coil domain-containing protein 157. (1010 aa)
	H671_1g2878	SEC14-like protein 3. (419 aa)
	I79_017093	SEC14-like protein 4. (356 aa)

Your Current Organism:

Cricetulus griseus

NCBI taxonomy Id: 10029
Other names: C. griseus, CHO cell lines, Chinese hamster, Chinese hamsters, Cricetulus aureus, Cricetulus barabensis griseus

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Tmed1	Tmed2	G3H6B1	G3HX40	Transmembrane emp24 domain-containing protein 1.	Transmembrane emp24 domain-containing protein 2.	0.600
Tmed2	Tmed1	G3HX40	G3H6B1	Transmembrane emp24 domain-containing protein 2.	Transmembrane emp24 domain-containing protein 1.	0.600
Tmed2	Tmed3	G3HX40	G3GTA9	Transmembrane emp24 domain-containing protein 2.	Transmembrane emp24 domain-containing protein 3.	0.896
Tmed2	Tmed5	G3HX40	G3HED4	Transmembrane emp24 domain-containing protein 2.	Transmembrane emp24 domain-containing protein 5.	0.703
Tmed2	Tmed7	G3HX40	G3HTM8	Transmembrane emp24 domain-containing protein 2.	Transmembrane emp24 domain-containing protein 7.	0.888
Tmed3	Tmed2	G3GTA9	G3HX40	Transmembrane emp24 domain-containing protein 3.	Transmembrane emp24 domain-containing protein 2.	0.896
Tmed5	Tmed2	G3HED4	G3HX40	Transmembrane emp24 domain-containing protein 5.	Transmembrane emp24 domain-containing protein 2.	0.703
Tmed7	Tmed2	G3HTM8	G3HX40	Transmembrane emp24 domain-containing protein 7.	Transmembrane emp24 domain-containing protein 2.	0.888