STRINGSTRING
Thoc5 Thoc5 I79_012765 I79_012765 I79_013015 I79_013015 Seh1l Seh1l Srsf7 Srsf7 Eif4a3 Eif4a3 I79_014275 I79_014275 Ncbp2 Ncbp2 Shld1 Shld1 Nup210 Nup210 I79_000314 I79_000314 Srsf1 Srsf1 CgPICR_006774 CgPICR_006774 I79_022365 I79_022365 Thoc1 Thoc1 Aaas Aaas Nup42 Nup42 I79_015652 I79_015652 I79_015655 I79_015655 U2af2 U2af2 Ddx39b Ddx39b Thoc6 Thoc6 Poldip3 Poldip3 CgPICR_014751 CgPICR_014751 CgPICR_014750 CgPICR_014750 Rnps1 Rnps1 Nup98 Nup98 Nxt1 Nxt1 Nup214 Nup214 Nup54 Nup54 I79_021570 I79_021570 I79_021449 I79_021449 Nup50 Nup50 I79_020565 I79_020565 Gle1 Gle1 I79_019984 I79_019984 I79_019983 I79_019983 Nup62 Nup62 Srsf9 Srsf9 Sema5b Sema5b I79_000930 I79_000930 Ndc1 Ndc1 Magoh Magoh Nup153 Nup153 Tpr Tpr Nup133 Nup133 Sec13 Sec13 Alyref Alyref Cdc40 Cdc40 Nup107 Nup107 I79_018302 I79_018302 Casc3 Casc3 Nup88 Nup88 I79_002900 I79_002900 Thoc3 Thoc3 Srsf5 Srsf5 Srsf4 Srsf4 Rbm8a Rbm8a I79_004909 I79_004909 I79_004945 I79_004945 Srek1 Srek1 Nup37 Nup37 I79_006194 I79_006194 I79_006195 I79_006195 I79_006282 I79_006282 I79_006332 I79_006332 I79_024154 I79_024154 I79_024485 I79_024485 I79_024656 I79_024656 I79_025350 I79_025350 I79_025385 I79_025385 I79_023067 I79_023067 Upf3b Upf3b Nxf1 Nxf1 I79_025456 I79_025456 I79_025474 I79_025474 I79_025501 I79_025501 I79_025570 I79_025570 I79_025586 I79_025586 I79_025620 I79_025620 I79_025647 I79_025647 I79_025662 I79_025662 I79_025672 I79_025672 I79_025858 I79_025858 I79_026256 I79_026256 Nup35 Nup35 Nup58 Nup58 Nup205 Nup205 Dhx38 Dhx38 I79_007719 I79_007719 Rae1 Rae1 I79_008042 I79_008042 CgPICR_013588 CgPICR_013588 Ddx39a Ddx39a Srsf6 Srsf6 Slu7 Slu7 I79_009734 I79_009734 I79_010456 I79_010456 Nup93 Nup93 Thoc7 Thoc7 Ranbp2 Ranbp2 Nup155 Nup155 I79_011000 I79_011000 Srrm1 Srrm1 Srsf3 Srsf3 I79_012084 I79_012084 I79_012459 I79_012459
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Thoc5THO complex subunit 5-like. (683 aa)
I79_012765U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (469 aa)
I79_013015Zinc finger CCCH domain-containing protein 11A. (522 aa)
Seh1lNucleoporin SEH1; Belongs to the WD repeat SEC13 family. (329 aa)
Srsf7Splicing factor, arginine/serine-rich 7. (227 aa)
Eif4a3Eukaryotic initiation factor 4A-III. (279 aa)
I79_014275RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (179 aa)
Ncbp2Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (156 aa)
Shld1Uncharacterized protein C20orf196-like. (208 aa)
Nup210Nuclear pore membrane glycoprotein 210. (295 aa)
I79_000314Nuclear pore membrane glycoprotein 210. (1437 aa)
Srsf1Splicing factor, arginine/serine-rich 1, transcript variant 1. (248 aa)
CgPICR_006774Pre-mRNA-splicing factor SLU7. (100 aa)
I79_022365Polymerase delta-interacting protein 3. (108 aa)
Thoc1THO complex subunit 1. (350 aa)
AaasAladin. (546 aa)
Nup42Nucleoporin-like 2. (224 aa)
I79_015652Nuclear RNA export factor 1. (481 aa)
I79_015655Nuclear RNA export factor 2. (620 aa)
U2af2U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (422 aa)
Ddx39bSpliceosome RNA helicase BAT1. (288 aa)
Thoc6Putative THO complex subunit 6 like protein. (341 aa)
Poldip3Polymerase delta-interacting protein 3. (373 aa)
CgPICR_014751Eukaryotic initiation factor 4A-III. (250 aa)
CgPICR_014750Eukaryotic initiation factor 4A-III. (115 aa)
Rnps1RNA-binding protein with serine-rich domain 1. (248 aa)
Nup98Nuclear pore complex protein Nup98-Nup96. (1070 aa)
Nxt1NTF2-related export protein 1. (140 aa)
Nup214Nuclear pore complex protein Nup214. (2079 aa)
Nup54Nucleoporin p54. (327 aa)
I79_021570Nuclear RNA export factor 2. (470 aa)
I79_021449Splicing factor, arginine/serine-rich 3. (131 aa)
Nup50Nucleoporin 50 kDa. (435 aa)
I79_020565NTF2-related export protein 1. (127 aa)
Gle1Nucleoporin GLE1. (679 aa)
I79_019984THO complex subunit 2. (630 aa)
I79_019983THO complex subunit 2. (140 aa)
Nup62Nuclear pore glycoprotein p62. (521 aa)
Srsf9Splicing factor, arginine/serine-rich 9. (91 aa)
Sema5bNucleoporin GLE1. (167 aa)
I79_000930Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (509 aa)
Ndc1Nucleoporin NDC1. (672 aa)
MagohProtein mago nashi-like. (146 aa)
Nup153Nuclear pore complex protein Nup153. (1326 aa)
TprNucleoprotein TPR. (2122 aa)
Nup133Nuclear pore complex protein Nup133. (632 aa)
Sec13Protein SEC13-like; Belongs to the WD repeat SEC13 family. (322 aa)
AlyrefTHO complex subunit 4. (187 aa)
Cdc40Pre-mRNA-processing factor 17. (579 aa)
Nup107Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (931 aa)
I79_018302Pre-mRNA-splicing factor SLU7. (100 aa)
Casc3Protein CASC3. (620 aa)
Nup88Nuclear pore complex protein Nup88. (610 aa)
I79_002900Nuclear pore complex protein Nup160. (1215 aa)
Thoc3THO complex subunit 3. (381 aa)
Srsf5Splicing factor, arginine/serine-rich 5. (269 aa)
Srsf4Splicing factor, arginine/serine-rich 4. (368 aa)
Rbm8aRNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (171 aa)
I79_004909Nucleoporin Nup43. (161 aa)
I79_004945Splicing factor, arginine/serine-rich 3. (161 aa)
Srek1Splicing factor, arginine/serine-rich 12. (611 aa)
Nup37Nucleoporin Nup37. (326 aa)
I79_006194Regulator of nonsense transcripts 3B. (154 aa)
I79_006195Regulator of nonsense transcripts 3B. (125 aa)
I79_006282Nuclear cap-binding protein subunit 1. (581 aa)
I79_006332THO complex subunit 1. (211 aa)
I79_024154Nucleoporin SEH1; Belongs to the WD repeat SEC13 family. (78 aa)
I79_024485THO complex subunit 2. (1588 aa)
I79_024656Nucleoporin NUP188-like. (1240 aa)
I79_025350Nucleoporin SEH1; Belongs to the WD repeat SEC13 family. (177 aa)
I79_025385Nucleoporin SEH1; Belongs to the WD repeat SEC13 family. (334 aa)
I79_023067Nucleoporin NUP188-like. (471 aa)
Upf3bRegulator of nonsense transcripts 3B. (89 aa)
Nxf1Nuclear RNA export factor 1-like protein. (621 aa)
I79_025456Nucleoporin SEH1; Belongs to the WD repeat SEC13 family. (84 aa)
I79_025474Nucleoporin SEH1; Belongs to the WD repeat SEC13 family. (202 aa)
I79_025501Nucleoporin SEH1. (201 aa)
I79_025570Spliceosome RNA helicase Bat1. (229 aa)
I79_025586Nucleoporin SEH1; Belongs to the WD repeat SEC13 family. (328 aa)
I79_025620Nucleoporin SEH1. (208 aa)
I79_025647Uncharacterized protein C1orf77-like. (65 aa)
I79_025662Uncharacterized protein C1orf77-like. (128 aa)
I79_025672Spliceosome RNA helicase BAT1. (155 aa)
I79_025858Spliceosome RNA helicase BAT1. (66 aa)
I79_026256Spliceosome RNA helicase Bat1. (103 aa)
Nup35Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family. (324 aa)
Nup58Nucleoporin p58/p45. (587 aa)
Nup205Nuclear pore complex protein Nup205. (1972 aa)
Dhx38Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16. (1227 aa)
I79_007719Splicing factor, arginine/serine-rich 11. (389 aa)
Rae1mRNA export factor. (368 aa)
I79_008042Nuclear pore membrane glycoprotein 210-like. (1570 aa)
CgPICR_013588CHTOP. (249 aa)
Ddx39aATP-dependent RNA helicase DDX39. (424 aa)
Srsf6Splicing factor, arginine/serine-rich 6. (210 aa)
Slu7Pre-mRNA-splicing factor SLU7. (564 aa)
I79_009734SAP domain-containing ribonucleoprotein. (106 aa)
I79_010456Uncharacterized protein C12orf50-like. (291 aa)
Nup93Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family. (780 aa)
Thoc7THO complex subunit 7-like. (152 aa)
Ranbp2E3 SUMO-protein ligase RanBP2. (3068 aa)
Nup155Nuclear pore complex protein Nup155. (369 aa)
I79_011000Uncharacterized protein. (101 aa)
Srrm1Serine/arginine repetitive matrix protein 1. (178 aa)
Srsf3Splicing factor, arginine/serine-rich 3. (164 aa)
I79_012084Serine/arginine repetitive matrix protein 1. (866 aa)
I79_012459Splicing factor U2AF 35 kDa subunit. (98 aa)
Your Current Organism:
Cricetulus griseus
NCBI taxonomy Id: 10029
Other names: C. griseus, CHO cell lines, Chinese hamster, Chinese hamsters, Cricetulus aureus, Cricetulus barabensis griseus
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