STRINGSTRING
I79_004945 I79_004945 Srek1 Srek1 Cstf2 Cstf2 Srsf4 Srsf4 Srsf5 Srsf5 Thoc3 Thoc3 Cstf3 Cstf3 I79_002686 I79_002686 Cdc40 Cdc40 Alyref Alyref Magoh Magoh I79_000967 I79_000967 Ncbp2 Ncbp2 Srsf1 Srsf1 I79_006194 I79_006194 Thoc7 Thoc7 I79_026256 I79_026256 I79_025858 I79_025858 I79_025672 I79_025672 I79_025662 I79_025662 I79_025647 I79_025647 I79_025570 I79_025570 I79_024485 I79_024485 I79_024439 I79_024439 I79_024401 I79_024401 I79_024281 I79_024281 I79_023503 I79_023503 Upf3b Upf3b Cpsf3 Cpsf3 I79_022365 I79_022365 I79_022214 I79_022214 I79_021449 I79_021449 I79_021397 I79_021397 I79_021272 I79_021272 I79_019984 I79_019984 I79_019983 I79_019983 I79_019581 I79_019581 Wdr33 Wdr33 Srsf9 Srsf9 Casc3 Casc3 I79_018302 I79_018302 I79_017886 I79_017886 Rnps1 Rnps1 CgPICR_014750 CgPICR_014750 CgPICR_014751 CgPICR_014751 Poldip3 Poldip3 Thoc6 Thoc6 Ddx39b Ddx39b U2af2 U2af2 Cpsf1 Cpsf1 Thoc1 Thoc1 Pcf11 Pcf11 CgPICR_006774 CgPICR_006774 I79_014275 I79_014275 Eif4a3 Eif4a3 Srsf7 Srsf7 CLP1 CLP1 I79_013417 I79_013417 I79_013015 I79_013015 I79_012765 I79_012765 Sympk Sympk Thoc5 Thoc5 I79_012459 I79_012459 I79_012364 I79_012364 I79_012084 I79_012084 Srsf3 Srsf3 Srrm1 Srrm1 I79_011000 I79_011000 I79_010456 I79_010456 Papola Papola I79_009734 I79_009734 Slu7 Slu7 Srsf6 Srsf6 Ddx39a Ddx39a CgPICR_013588 CgPICR_013588 Cstf1 Cstf1 I79_007719 I79_007719 Dhx38 Dhx38 Cstf2t Cstf2t I79_006332 I79_006332 I79_006282 I79_006282 I79_006195 I79_006195 Rbm8a Rbm8a
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
I79_004945Splicing factor, arginine/serine-rich 3. (161 aa)
Srek1Splicing factor, arginine/serine-rich 12. (611 aa)
Cstf2Cleavage stimulation factor 64 kDa subunit. (558 aa)
Srsf4Splicing factor, arginine/serine-rich 4. (368 aa)
Srsf5Splicing factor, arginine/serine-rich 5. (269 aa)
Thoc3THO complex subunit 3. (381 aa)
Cstf3Cleavage stimulation factor 77 kDa subunit. (717 aa)
I79_002686Cleavage and polyadenylation specificity factor subunit 6. (500 aa)
Cdc40Pre-mRNA-processing factor 17. (579 aa)
AlyrefTHO complex subunit 4. (187 aa)
MagohProtein mago nashi-like. (146 aa)
I79_000967Putative cleavage and polyadenylation specificity factor subunit 4-like protein. (216 aa)
Ncbp2Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (156 aa)
Srsf1Splicing factor, arginine/serine-rich 1, transcript variant 1. (248 aa)
I79_006194Regulator of nonsense transcripts 3B. (154 aa)
Thoc7THO complex subunit 7-like. (152 aa)
I79_026256Spliceosome RNA helicase Bat1. (103 aa)
I79_025858Spliceosome RNA helicase BAT1. (66 aa)
I79_025672Spliceosome RNA helicase BAT1. (155 aa)
I79_025662Uncharacterized protein C1orf77-like. (128 aa)
I79_025647Uncharacterized protein C1orf77-like. (65 aa)
I79_025570Spliceosome RNA helicase Bat1. (229 aa)
I79_024485THO complex subunit 2. (1588 aa)
I79_024439Poly(A) polymerase alpha. (349 aa)
I79_024401Poly(A) polymerase alpha. (384 aa)
I79_024281Poly(A) polymerase alpha. (207 aa)
I79_023503Poly(A) polymerase alpha. (167 aa)
Upf3bRegulator of nonsense transcripts 3B. (89 aa)
Cpsf3Cleavage and polyadenylation specificity factor subunit 3. (647 aa)
I79_022365Polymerase delta-interacting protein 3. (108 aa)
I79_022214Cleavage and polyadenylation specificity factor subunit 7. (361 aa)
I79_021449Splicing factor, arginine/serine-rich 3. (131 aa)
I79_021397Poly(A) polymerase alpha. (221 aa)
I79_021272Poly(A) polymerase alpha. (230 aa)
I79_019984THO complex subunit 2. (630 aa)
I79_019983THO complex subunit 2. (140 aa)
I79_019581Pre-mRNA 3'-end-processing factor FIP1. (394 aa)
Wdr33WD repeat-containing protein 33. (960 aa)
Srsf9Splicing factor, arginine/serine-rich 9. (91 aa)
Casc3Protein CASC3. (620 aa)
I79_018302Pre-mRNA-splicing factor SLU7. (100 aa)
I79_017886Cleavage and polyadenylation specificity factor subunit 4. (274 aa)
Rnps1RNA-binding protein with serine-rich domain 1. (248 aa)
CgPICR_014750Eukaryotic initiation factor 4A-III. (115 aa)
CgPICR_014751Eukaryotic initiation factor 4A-III. (250 aa)
Poldip3Polymerase delta-interacting protein 3. (373 aa)
Thoc6Putative THO complex subunit 6 like protein. (341 aa)
Ddx39bSpliceosome RNA helicase BAT1. (288 aa)
U2af2U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (422 aa)
Cpsf1Cleavage and polyadenylation specificity factor subunit 1. (1419 aa)
Thoc1THO complex subunit 1. (350 aa)
Pcf11Pre-mRNA cleavage complex 2 protein Pcf11. (1611 aa)
CgPICR_006774Pre-mRNA-splicing factor SLU7. (100 aa)
I79_014275RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (179 aa)
Eif4a3Eukaryotic initiation factor 4A-III. (279 aa)
Srsf7Splicing factor, arginine/serine-rich 7. (227 aa)
CLP1Polyribonucleotide 5'-hydroxyl-kinase Clp1; Polynucleotide kinase that can phosphorylate the 5'-hydroxyl groups of double-stranded RNA (dsRNA), single-stranded RNA (ssRNA), double stranded DNA (dsDNA) and double-stranded DNA:RNA hybrids. dsRNA is phosphorylated more efficiently than dsDNA, and the RNA component of a DNA:RNA hybrid is phosphorylated more efficiently than the DNA component. Appears to have roles in both tRNA splicing and mRNA 3'-end formation. Component of the tRNA splicing endonuclease complex. Phosphorylates the 5'-terminus of the tRNA 3'-exon during tRNA splicing; thi [...] (425 aa)
I79_013417Polyadenylate-binding protein 2. (244 aa)
I79_013015Zinc finger CCCH domain-containing protein 11A. (522 aa)
I79_012765U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (469 aa)
SympkSymplekin. (280 aa)
Thoc5THO complex subunit 5-like. (683 aa)
I79_012459Splicing factor U2AF 35 kDa subunit. (98 aa)
I79_012364Cleavage and polyadenylation specificity factor subunit 4. (107 aa)
I79_012084Serine/arginine repetitive matrix protein 1. (866 aa)
Srsf3Splicing factor, arginine/serine-rich 3. (164 aa)
Srrm1Serine/arginine repetitive matrix protein 1. (178 aa)
I79_011000Uncharacterized protein. (101 aa)
I79_010456Uncharacterized protein C12orf50-like. (291 aa)
PapolaPoly(A) polymerase alpha. (63 aa)
I79_009734SAP domain-containing ribonucleoprotein. (106 aa)
Slu7Pre-mRNA-splicing factor SLU7. (564 aa)
Srsf6Splicing factor, arginine/serine-rich 6. (210 aa)
Ddx39aATP-dependent RNA helicase DDX39. (424 aa)
CgPICR_013588CHTOP. (249 aa)
Cstf1Cleavage stimulation factor 50 kDa subunit. (431 aa)
I79_007719Splicing factor, arginine/serine-rich 11. (389 aa)
Dhx38Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16. (1227 aa)
Cstf2tCleavage stimulation factor 64 kDa subunit, tau variant. (645 aa)
I79_006332THO complex subunit 1. (211 aa)
I79_006282Nuclear cap-binding protein subunit 1. (581 aa)
I79_006195Regulator of nonsense transcripts 3B. (125 aa)
Rbm8aRNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (171 aa)
Your Current Organism:
Cricetulus griseus
NCBI taxonomy Id: 10029
Other names: C. griseus, CHO cell lines, Chinese hamster, Chinese hamsters, Cricetulus aureus, Cricetulus barabensis griseus
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