(22 nodes) (2011) Emerging paramyxoviruses: molecular mechanisms and antiviral strategies. network (Cricetulus griseus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Ddx10	RNA helicase. (877 aa)
	I79_001024	Ephrin-B2; Belongs to the ephrin family. (373 aa)
	Calm2	Calmodulin; Belongs to the calmodulin family. (161 aa)
	I79_013907	Ephrin-B2. (148 aa)
	I79_014089	P protein. (398 aa)
	CgPICR_017756	Calmodulin-like protein; Belongs to the calmodulin family. (98 aa)
	Ddx55	RNA helicase. (600 aa)
	I79_018847	Calmodulin; Belongs to the calmodulin family. (152 aa)
	Stpg4	Calmodulin; Belongs to the calmodulin family. (211 aa)
	I79_020786	Calmodulin; Belongs to the calmodulin family. (141 aa)
	I79_021151	Ephrin-B2. (178 aa)
	I79_024941	Calmodulin; Belongs to the calmodulin family. (149 aa)
	I79_024975	Ephrin-B2. (148 aa)
	I79_025433	Ephrin-B2; Belongs to the ephrin family. (70 aa)
	I79_025440	Cathepsin L1; Belongs to the peptidase C1 family. (333 aa)
	I79_025496	Ephrin-B2. (147 aa)
	I79_025497	Ephrin-B2; Belongs to the ephrin family. (69 aa)
	I79_025518	Ephrin-B2. (123 aa)
	I79_025535	Ephrin-B2. (125 aa)
	I79_025726	Ephrin-B2. (121 aa)
	I79_026231	Ephrin-B2; Belongs to the ephrin family. (68 aa)
	fur	Furin endoprotease; Belongs to the peptidase S8 family. (794 aa)

Your Current Organism:

Cricetulus griseus

NCBI taxonomy Id: 10029
Other names: C. griseus, CHO cell lines, Chinese hamster, Chinese hamsters, Cricetulus aureus, Cricetulus barabensis griseus

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Ddx10	Ddx55	G3HFP5	G3HX41	RNA helicase.	RNA helicase.	0.734
Ddx10	I79_014089	G3HFP5	G3HT69	RNA helicase.	P protein.	0.508
Ddx55	Ddx10	G3HX41	G3HFP5	RNA helicase.	RNA helicase.	0.734
Ddx55	I79_014089	G3HX41	G3HT69	RNA helicase.	P protein.	0.508
I79_014089	Ddx10	G3HT69	G3HFP5	P protein.	RNA helicase.	0.508
I79_014089	Ddx55	G3HT69	G3HX41	P protein.	RNA helicase.	0.508
I79_025433	I79_025518	G3INB8	G3INJ3	Ephrin-B2; Belongs to the ephrin family.	Ephrin-B2.	0.451
I79_025433	I79_026231	G3INB8	G3IQC0	Ephrin-B2; Belongs to the ephrin family.	Ephrin-B2; Belongs to the ephrin family.	0.495
I79_025440	fur	G3INC5	Q60426	Cathepsin L1; Belongs to the peptidase C1 family.	Furin endoprotease; Belongs to the peptidase S8 family.	0.883
I79_025518	I79_025433	G3INJ3	G3INB8	Ephrin-B2.	Ephrin-B2; Belongs to the ephrin family.	0.451
I79_026231	I79_025433	G3IQC0	G3INB8	Ephrin-B2; Belongs to the ephrin family.	Ephrin-B2; Belongs to the ephrin family.	0.495
fur	I79_025440	Q60426	G3INC5	Furin endoprotease; Belongs to the peptidase S8 family.	Cathepsin L1; Belongs to the peptidase C1 family.	0.883