STRINGSTRING
I79_016980 I79_016980 Casp8 Casp8 Tmf1 Tmf1 I79_001144 I79_001144 Adar Adar Srp14 Srp14 Trex1 Trex1 Runx3 Runx3 Ro60 Ro60 Dmd Dmd I79_017574 I79_017574 I79_022161 I79_022161 Cbx5 Cbx5
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
I79_016980Dystrophin. (193 aa)
Casp8Caspase-8; Belongs to the peptidase C14A family. (481 aa)
Tmf1TATA element modulatory factor. (1094 aa)
I79_001144Fukutin. (743 aa)
AdarDouble-stranded RNA-specific adenosine deaminase. (1174 aa)
Srp14Signal recognition particle 14 kDa protein. (121 aa)
Trex1Three prime repair exonuclease 1. (320 aa)
Runx3Runt-related transcription factor 3. (299 aa)
Ro6060 kDa SS-A/Ro ribonucleoprotein. (503 aa)
DmdDystrophin. (617 aa)
I79_017574Caspase-12; Belongs to the peptidase C14A family. (729 aa)
I79_022161Dystrophin. (655 aa)
Cbx5Heterochromatin protein 1 alpha. (191 aa)
Your Current Organism:
Cricetulus griseus
NCBI taxonomy Id: 10029
Other names: C. griseus, CHO cell lines, Chinese hamster, Chinese hamsters, Cricetulus aureus, Cricetulus barabensis griseus
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