STRINGSTRING
I79_022257 I79_022257 Spp1 Spp1 Src Src I79_004731 I79_004731 I79_004732 I79_004732 Fga Fga Smad3 Smad3 Smad2 Smad2 Vim Vim Fyn Fyn Cd81 Cd81 Polr2f Polr2f Itga5 Itga5
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
I79_022257Actin. (98 aa)
Spp1Osteopontin. (117 aa)
SrcTyrosine-protein kinase. (536 aa)
I79_004731Palladin. (311 aa)
I79_004732Palladin. (379 aa)
FgaFibrinogen alpha chain. (1209 aa)
Smad3Mothers against decapentaplegic homolog. (363 aa)
Smad2Mothers against decapentaplegic homolog. (467 aa)
VimVimentin; Belongs to the intermediate filament family. (466 aa)
FynProto-oncogene tyrosine-protein kinase Fyn. (232 aa)
Cd81Tetraspanin. (236 aa)
Polr2fDNA-directed RNA polymerases I, II, and III subunit RPABC2. (121 aa)
Itga5Integrin alpha-5; Belongs to the integrin alpha chain family. (729 aa)
Your Current Organism:
Cricetulus griseus
NCBI taxonomy Id: 10029
Other names: C. griseus, CHO cell lines, Chinese hamster, Chinese hamsters, Cricetulus aureus, Cricetulus barabensis griseus
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