(22 nodes) (2021) Nuclear envelope mechanobiology: linking the nuclear structure and function. network (Cricetulus griseus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	I79_001170	Nesprin-1. (1360 aa)
	I79_001171	Nesprin-1. (1173 aa)
	Banf2	Barrier-to-autointegration factor-like protein. (90 aa)
	Syne1	Nesprin-1. (1959 aa)
	Vcl	Vinculin. (1143 aa)
	Src	Tyrosine-protein kinase. (536 aa)
	I79_003090	Myosin-1; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1167 aa)
	I79_004172	Protein 4.1. (773 aa)
	I79_005353	Nesprin-2. (903 aa)
	I79_005354	Nesprin-2. (54 aa)
	Syne2	Nesprin-2. (1667 aa)
	I79_015376	Uncharacterized protein. (2072 aa)
	Sun1	Protein unc-84-like A. (916 aa)
	Tln2	Talin-2. (2542 aa)
	Lmnb2	Lamin-B2; Belongs to the intermediate filament family. (602 aa)
	Zyx	Zyxin. (480 aa)
	Rhoa	Transforming protein RhoA. (193 aa)
	I79_022257	Actin. (98 aa)
	Emd	Emerin. (186 aa)
	Sun2	Protein unc-84-like B. (730 aa)
	Banf1	Barrier-to-autointegration factor. (89 aa)
	Fhod1	FH1/FH2 domain-containing protein 1. (1182 aa)

Your Current Organism:

Cricetulus griseus

NCBI taxonomy Id: 10029
Other names: C. griseus, CHO cell lines, Chinese hamster, Chinese hamsters, Cricetulus aureus, Cricetulus barabensis griseus

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Banf1	Emd	G3I2F5	G3IBK3	Barrier-to-autointegration factor.	Emerin.	0.995
Banf1	Fhod1	G3I2F5	G3HZL3	Barrier-to-autointegration factor.	FH1/FH2 domain-containing protein 1.	0.501
Banf1	I79_001170	G3I2F5	G3GU23	Barrier-to-autointegration factor.	Nesprin-1.	0.686
Banf1	I79_001171	G3I2F5	G3GU24	Barrier-to-autointegration factor.	Nesprin-1.	0.686
Banf1	I79_003090	G3I2F5	G3GZ39	Barrier-to-autointegration factor.	Myosin-1; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.598
Banf1	I79_004172	G3I2F5	G3H1Y0	Barrier-to-autointegration factor.	Protein 4.1.	0.449
Banf1	I79_022257	G3I2F5	G3IEV3	Barrier-to-autointegration factor.	Actin.	0.555
Banf1	Lmnb2	G3I2F5	G3HSM8	Barrier-to-autointegration factor.	Lamin-B2; Belongs to the intermediate filament family.	0.898
Banf1	Sun1	G3I2F5	G3HUQ1	Barrier-to-autointegration factor.	Protein unc-84-like A.	0.756
Banf1	Sun2	G3I2F5	G3I2J5	Barrier-to-autointegration factor.	Protein unc-84-like B.	0.617
Banf1	Syne1	G3I2F5	G3GU22	Barrier-to-autointegration factor.	Nesprin-1.	0.683
Banf2	Emd	G3GVX0	G3IBK3	Barrier-to-autointegration factor-like protein.	Emerin.	0.984
Banf2	Fhod1	G3GVX0	G3HZL3	Barrier-to-autointegration factor-like protein.	FH1/FH2 domain-containing protein 1.	0.501
Banf2	I79_001170	G3GVX0	G3GU23	Barrier-to-autointegration factor-like protein.	Nesprin-1.	0.686
Banf2	I79_001171	G3GVX0	G3GU24	Barrier-to-autointegration factor-like protein.	Nesprin-1.	0.686
Banf2	I79_003090	G3GVX0	G3GZ39	Barrier-to-autointegration factor-like protein.	Myosin-1; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.598
Banf2	I79_004172	G3GVX0	G3H1Y0	Barrier-to-autointegration factor-like protein.	Protein 4.1.	0.441
Banf2	I79_015376	G3GVX0	G3HWJ3	Barrier-to-autointegration factor-like protein.	Uncharacterized protein.	0.402
Banf2	I79_022257	G3GVX0	G3IEV3	Barrier-to-autointegration factor-like protein.	Actin.	0.544
Banf2	Lmnb2	G3GVX0	G3HSM8	Barrier-to-autointegration factor-like protein.	Lamin-B2; Belongs to the intermediate filament family.	0.802