(14 nodes) (2022) Emerging viruses: Cross-species transmission of coronaviruses, filoviruses, henipaviruses, and rotaviruses from bats. network (Cricetulus griseus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	I79_025433	Ephrin-B2; Belongs to the ephrin family. (70 aa)
	fur	Furin endoprotease; Belongs to the peptidase S8 family. (794 aa)
	I79_024975	Ephrin-B2. (148 aa)
	I79_021151	Ephrin-B2. (178 aa)
	I79_016618	Dipeptidyl peptidase 4; Belongs to the peptidase S9B family. (470 aa)
	I79_013907	Ephrin-B2. (148 aa)
	I79_001024	Ephrin-B2; Belongs to the ephrin family. (373 aa)
	I79_026231	Ephrin-B2; Belongs to the ephrin family. (68 aa)
	I79_025726	Ephrin-B2. (121 aa)
	Gp2	Pancreatic secretory granule membrane major glycoprotein GP2. (199 aa)
	I79_025535	Ephrin-B2. (125 aa)
	I79_025518	Ephrin-B2. (123 aa)
	I79_025497	Ephrin-B2; Belongs to the ephrin family. (69 aa)
	I79_025496	Ephrin-B2. (147 aa)

Your Current Organism:

Cricetulus griseus

NCBI taxonomy Id: 10029
Other names: C. griseus, CHO cell lines, Chinese hamster, Chinese hamsters, Cricetulus aureus, Cricetulus barabensis griseus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Gp2	I79_016618	G3IP11	G3HZV4	Pancreatic secretory granule membrane major glycoprotein GP2.	Dipeptidyl peptidase 4; Belongs to the peptidase S9B family.	0.579
Gp2	fur	G3IP11	Q60426	Pancreatic secretory granule membrane major glycoprotein GP2.	Furin endoprotease; Belongs to the peptidase S8 family.	0.760
I79_016618	Gp2	G3HZV4	G3IP11	Dipeptidyl peptidase 4; Belongs to the peptidase S9B family.	Pancreatic secretory granule membrane major glycoprotein GP2.	0.579
I79_016618	fur	G3HZV4	Q60426	Dipeptidyl peptidase 4; Belongs to the peptidase S9B family.	Furin endoprotease; Belongs to the peptidase S8 family.	0.645
I79_025433	I79_025518	G3INB8	G3INJ3	Ephrin-B2; Belongs to the ephrin family.	Ephrin-B2.	0.451
I79_025433	I79_026231	G3INB8	G3IQC0	Ephrin-B2; Belongs to the ephrin family.	Ephrin-B2; Belongs to the ephrin family.	0.495
I79_025518	I79_025433	G3INJ3	G3INB8	Ephrin-B2.	Ephrin-B2; Belongs to the ephrin family.	0.451
I79_026231	I79_025433	G3IQC0	G3INB8	Ephrin-B2; Belongs to the ephrin family.	Ephrin-B2; Belongs to the ephrin family.	0.495
fur	Gp2	Q60426	G3IP11	Furin endoprotease; Belongs to the peptidase S8 family.	Pancreatic secretory granule membrane major glycoprotein GP2.	0.760
fur	I79_016618	Q60426	G3HZV4	Furin endoprotease; Belongs to the peptidase S8 family.	Dipeptidyl peptidase 4; Belongs to the peptidase S9B family.	0.645