Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SFE43198.1 | SFE93719.1 | SAMN04488541_1001167 | SAMN04488541_101083 | Single-strand binding protein. | DNA polymerase-3 subunit delta'. | 0.832 |
| SFE43198.1 | SFF05727.1 | SAMN04488541_1001167 | SAMN04488541_101447 | Single-strand binding protein. | Exonuclease RecJ. | 0.468 |
| SFE43198.1 | SFF27331.1 | SAMN04488541_1001167 | SAMN04488541_102319 | Single-strand binding protein. | DNA polymerase III, alpha subunit. | 0.873 |
| SFE43198.1 | dnaX | SAMN04488541_1001167 | SAMN04488541_102938 | Single-strand binding protein. | DNA polymerase-3 subunit gamma/tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.832 |
| SFE44880.1 | SFE93719.1 | SAMN04488541_1001226 | SAMN04488541_101083 | Single-strand binding protein. | DNA polymerase-3 subunit delta'. | 0.832 |
| SFE44880.1 | SFF05727.1 | SAMN04488541_1001226 | SAMN04488541_101447 | Single-strand binding protein. | Exonuclease RecJ. | 0.460 |
| SFE44880.1 | SFF27331.1 | SAMN04488541_1001226 | SAMN04488541_102319 | Single-strand binding protein. | DNA polymerase III, alpha subunit. | 0.873 |
| SFE44880.1 | dnaX | SAMN04488541_1001226 | SAMN04488541_102938 | Single-strand binding protein. | DNA polymerase-3 subunit gamma/tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.832 |
| SFE47571.1 | SFF11164.1 | SAMN04488541_100212 | SAMN04488541_101637 | DNA ligase-1. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.999 |
| SFE47571.1 | SFF23292.1 | SAMN04488541_100212 | SAMN04488541_102130 | DNA ligase-1. | Metallo-beta-lactamase family protein. | 0.542 |
| SFE47571.1 | SFF37602.1 | SAMN04488541_100212 | SAMN04488541_102913 | DNA ligase-1. | Putative mRNA 3-end processing factor. | 0.988 |
| SFE47571.1 | ligA | SAMN04488541_100212 | SAMN04488541_101263 | DNA ligase-1. | DNA ligase (NAD+); DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. | 0.655 |
| SFE69262.1 | SFE82543.1 | SAMN04488541_100567 | SAMN04488541_1007119 | DNA helicase-2 / ATP-dependent DNA helicase PcrA. | DNA polymerase-3 subunit epsilon. | 0.404 |
| SFE69262.1 | SFF11164.1 | SAMN04488541_100567 | SAMN04488541_101637 | DNA helicase-2 / ATP-dependent DNA helicase PcrA. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.894 |
| SFE69262.1 | SFF27331.1 | SAMN04488541_100567 | SAMN04488541_102319 | DNA helicase-2 / ATP-dependent DNA helicase PcrA. | DNA polymerase III, alpha subunit. | 0.579 |
| SFE69262.1 | SFF55861.1 | SAMN04488541_100567 | SAMN04488541_105714 | DNA helicase-2 / ATP-dependent DNA helicase PcrA. | DNA polymerase-3 subunit epsilon. | 0.404 |
| SFE69262.1 | ligA | SAMN04488541_100567 | SAMN04488541_101263 | DNA helicase-2 / ATP-dependent DNA helicase PcrA. | DNA ligase (NAD+); DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. | 0.695 |
| SFE69262.1 | mutL | SAMN04488541_100567 | SAMN04488541_103445 | DNA helicase-2 / ATP-dependent DNA helicase PcrA. | DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.858 |
| SFE82543.1 | SFE69262.1 | SAMN04488541_1007119 | SAMN04488541_100567 | DNA polymerase-3 subunit epsilon. | DNA helicase-2 / ATP-dependent DNA helicase PcrA. | 0.404 |
| SFE82543.1 | SFE93719.1 | SAMN04488541_1007119 | SAMN04488541_101083 | DNA polymerase-3 subunit epsilon. | DNA polymerase-3 subunit delta'. | 0.933 |
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