STRINGSTRING
Ncbp2 Ncbp2 Rbm22 Rbm22 LOC101840102 LOC101840102 ENSMAUP00000019942 ENSMAUP00000019942 Hexim1 Hexim1 Lsm4 Lsm4 Lrrc51 Lrrc51 Cdk9 Cdk9 Snrnp70 Snrnp70 Eftud2 Eftud2 Snrpd3 Snrpd3 Rnpc3 Rnpc3 Hexim2 Hexim2 Toe1 Toe1 Sf3b3 Sf3b3 Lsm3 Lsm3 Tut1 Tut1 Sart3 Sart3 Prpf31 Prpf31 Ddx21 Ddx21 Snu13 Snu13 Ccnt2 Ccnt2 Hnrnpu Hnrnpu Snrpa Snrpa Ro60 Ro60 Ddx39b Ddx39b Celf3 Celf3 Prpf8 Prpf8 Mettl16 Mettl16 Isg20 Isg20 Lrmda Lrmda Snrpa1 Snrpa1 Ccnt1 Ccnt1 Lsm11 Lsm11 Rbm41 Rbm41 Lsm10 Lsm10 Rbm7 Rbm7 Prpf4 Prpf4 Eif5al1 Eif5al1 Tex16 Tex16 Snrpb2 Snrpb2 Larp7 Larp7 Gemin5 Gemin5 Rbm7-2 Rbm7-2 Snrnp35 Snrnp35 Mepce Mepce
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Ncbp2Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (156 aa)
Rbm22pre-mRNA-splicing factor RBM22. (420 aa)
LOC101840102Eukaryotic translation initiation factor 5A. (86 aa)
ENSMAUP00000019942annotation not available (190 aa)
Hexim1Protein HEXIM1. (246 aa)
Lsm4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (103 aa)
Lrrc51Leucine-rich repeat-containing protein 51. (192 aa)
Cdk9Cyclin-dependent kinase 9; Belongs to the protein kinase superfamily. (372 aa)
Snrnp70U1 small nuclear ribonucleoprotein 70 kDa. (444 aa)
Eftud2116 kDa U5 small nuclear ribonucleoprotein component isoform X1. (972 aa)
Snrpd3Small nuclear ribonucleoprotein Sm D3; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone pre-mRNA 3'-end processing. (126 aa)
Rnpc3RNA-binding protein 40. (514 aa)
Hexim2Protein HEXIM2. (312 aa)
Toe1Target of EGR1 protein 1. (511 aa)
Sf3b3Splicing factor 3b subunit 3. (906 aa)
Lsm3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (58 aa)
Tut1Speckle targeted PIP5K1A-regulated poly(A) polymerase. (761 aa)
Sart3Squamous cell carcinoma antigen recognized by T-cells 3 isoform X2. (955 aa)
Prpf31U4/U6 small nuclear ribonucleoprotein Prp31. (499 aa)
Ddx21Nucleolar RNA helicase 2. (793 aa)
Snu13Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (127 aa)
Ccnt2cyclin-T2 isoform X1; Belongs to the cyclin family. (714 aa)
HnrnpuHeterogeneous nuclear ribonucleoprotein U. (813 aa)
SnrpaU1 small nuclear ribonucleoprotein A. (285 aa)
Ro6060 kDa SS-A/Ro ribonucleoprotein. (538 aa)
Ddx39bSpliceosome RNA helicase DDX39B. (428 aa)
Celf3CUGBP Elav-like family member 3 isoform X1. (462 aa)
Prpf8pre-mRNA-processing-splicing factor 8. (322 aa)
Mettl16U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase; RNA N6-methyltransferase that methylates adenosine residues of a subset of RNAs and plays a key role in S-adenosyl-L-methionine homeostasis by regulating expression of MAT2A transcripts. Able to N6- methylate a subset of mRNAs and U6 small nuclear RNAs (U6 snRNAs). In contrast to the METTL3-METTL14 heterodimer, only able to methylate a limited number of RNAs: requires both a 5'UACAGAGAA-3' nonamer sequence and a specific RNA structure. In presence of S-adenosyl-L-methionine, binds the 3'-UTR region of MAT2A mRNA and specifical [...] (519 aa)
Isg20Interferon-stimulated gene 20 kDa protein isoform X3. (183 aa)
LrmdaLeucine-rich repeat-containing protein C10orf11 homolog isoform X3. (228 aa)
Snrpa1U2 small nuclear ribonucleoprotein A' isoform X1. (255 aa)
Ccnt1cyclin-T1; Belongs to the cyclin family. (727 aa)
Lsm11U7 snRNA-associated Sm-like protein LSm11. (361 aa)
Rbm41RNA-binding protein 41 isoform X2. (437 aa)
Lsm10U7 snRNA-associated Sm-like protein LSm10. (122 aa)
Rbm7RNA binding motif protein 7. (155 aa)
Prpf4U4/U6 small nuclear ribonucleoprotein Prp4. (521 aa)
Eif5al1Eukaryotic translation initiation factor 5A. (124 aa)
Tex16Dentin sialophosphoprotein-like. (1133 aa)
Snrpb2U2 small nuclear ribonucleoprotein B'. (225 aa)
Larp7La-related protein 7. (497 aa)
Gemin5Gem-associated protein 5 isoform X3. (1499 aa)
Rbm7-2RNA-binding protein 7. (265 aa)
Snrnp35U11/U12 small nuclear ribonucleoprotein 35 kDa protein. (246 aa)
Mepce7SK snRNA methylphosphate capping enzyme. (660 aa)
Your Current Organism:
Mesocricetus auratus
NCBI taxonomy Id: 10036
Other names: Golden hamsters, M. auratus, Syrian golden hamster, Syrian golden hamsters, Syrian hamster, Syrian hamsters, golden hamster
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